Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5 122 1e-22 >seq5 Length=2767003 Score = 122 bits (134), Expect = 1e-22 Identities = 381/587 (65%), Gaps = 6/587 (1%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| ||||| || || ||||| |||| || | ||||| || || ||||| Sbjct 1872443 CAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 1872384 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || ||||| ||||| ||||| |||||||| || |||| || || || || || |||||| Sbjct 1872383 CCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAAG 1872324 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GT 39793 ||||| || || || ||||| || | || | ||| || | | | || | | Sbjct 1872323 ATGCCCTCGACGGCGGCAAAGGCGATCAGCCGCTCGCCAAAGGTCGACTCGTCGTCGGAG 1872264 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 |||||||| | ||||| || || |||||||| | || || || || || || || || Sbjct 1872263 ATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTTG 1872204 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 || || || | || | || || | ||||| || || | ||| ||| || Sbjct 1872203 AACAGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACGTT 1872144 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || || |||||||| || ||| ||||| || ||||| || || | || || | | Sbjct 1872143 TCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGACC 1872084 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || ||||| | |||| ||| ||| || || ||||| || ||||| ||| ||| Sbjct 1872083 TGCACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTCACAATACCATCGGAAGCAGCA 1872024 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTG-TCAATTTATTCCAG 40090 || || |||| || || || || | || ||| | || | || | |||| Sbjct 1872023 AAGAAGGCCAGCACGTGCGAGATGAAGAACCGCTCGTCGTTGTTGAGCCGGTTCTCCCAG 1871964 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || || || || | ||| | || || || ||||| || || ||||| ||||| Sbjct 1871963 TCGCCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTC 1871904 Query 40151 TTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 |||||||| | ||| || || | || || || || || | ||||| Sbjct 1871903 TTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAA 1871857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908447959240