Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 seq3 95.1 1e-14 seq1 82.4 6e-11 >seq2 Length=4160336 Score = 113 bits (124), Expect = 4e-20 Identities = 257/386 (67%), Gaps = 3/386 (1%) Strand=Plus/Minus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 || || ||| |||| ||||| || | |||| || ||||||| || ||||||| ||| ||| Sbjct 4110976 GGGCACTCGTTGGGGCACATGAGAGTCCACTCGGCGTTCTGCTCGACTCGCTCCATGAAC 4110917 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 | || || | ||| | || |||||||||| ||| |||| || |||| Sbjct 4110916 AGGTCGGGGATCCAGAGAGCCAGGAACAGATCTCGGGCTCGGATCTCCTCCTTACCGTGG 4110857 Query 131723 AtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCC 131782 | ||| || | | || || || | ||| | |||||||| |||| |||| || Sbjct 4110856 TTCTTTCGCAGCTCGCAGAACTCGAAGACGTCATCGTGCCAGGGCTCCAGGTACATGGCA 4110797 Query 131783 ATTGCGCCTTTGCGCTTACCGCCT---TGATTAACATGACGAACCATGTTGTTGTATACG 131839 | || || ||||| |||| || | || | ||| | |||||||||| || Sbjct 4110796 AAGGCTCCGGGTCGCTTGTTGCCTCCCTGGTCGACGTATCGAGCGGTGTTGTTGTAGACA 4110737 Query 131840 CGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTG 131899 |||| ||||||| | | |||||||| | | || ||||| | ||||||| || || Sbjct 4110736 CGCAGCATGGGCACGATACCGTTGGAGGTACCGTTGGTTCCGGCAATGTAGGATCCGGTG 4110677 Query 131900 GCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCAT 131959 |||| ||| ||||| | | || ||||||||||| || | || ||||| || || || Sbjct 4110676 GCTCGGATGTTGTGGATGGACAGACCAATACCTCCAGCGGACTTGGAGATGAGAGCACAA 4110617 Query 131960 TTGGTTAGAGTGTTATAGATACCTTC 131985 | | || |||| ||||| || || Sbjct 4110616 GTCTTGAGGGTGTCGTAGATGCCGTC 4110591 >seq3 Length=2943663 Score = 95.1 bits (104), Expect = 1e-14 Identities = 217/320 (68%), Gaps = 9/320 (3%) Strand=Plus/Plus Query 131644 TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTT 131703 ||| || |||||||| |||| ||||||||||| || ||||| ||||| ||||| ||| | Sbjct 1832199 TTCGACCCGCTTCATGAACAGGTCCGGCACCCACAATGCGTAGAACAGGTCTCTTGCTCT 1832258 Query 131704 TTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCA 131763 ||||| |||| || |||| || || | || || | ||| || |||||||| Sbjct 1832259 GTTCTCCTCTGCTCCGTGGTTTTTCCGCAGGTTCAGGAAATCGAGAATATCGGCATGCCA 1832318 Query 131764 GGGTTCCAAATACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACG 131820 ||| |||| ||| | || | || || ||| || || || || | |||| || Sbjct 1832319 GGGCTCCAGATAGATGGCAAACGCTCCGGGACGCTTGTTTCCACCCTGGTCGACATACCG 1832378 Query 131821 AACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCT 131880 | |||||||| | || | | |||||| | | || ||| |||| | | | Sbjct 1832379 TGCGGTGTTGTTGAACACCCTGAGCATGGGAACAATGCCACTGGACCTTCCTTGAGACCC 1832438 Query 131881 CTTAATG-TAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCG 131938 ||||| |||| || ||||| ||||| || |||| | || || |||||||| |||| Sbjct 1832439 AGTAATGATAGC-ACCCTTGGCCCTGATATTATGAATATGCAGACCGATACCTCCAGCCG 1832497 Query 131939 TATTTAGAGATTAGTGCGCA 131958 | ||| |||||| |||||| Sbjct 1832498 T-TTTCGAGATT--TGCGCA 1832514 >seq1 Length=4858313 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 96897 GGGTTTCATGTACACGAGTTTGGCGACACGAGCAACGGCTGCACTTCGGCCGGCGAACAT 96956 || || || || ||||||||||| |||| | ||||||||||||||| || ||| || Sbjct 2020515 GGATTCCACGTCCACGAGTTTGGTGACAACACCAACGGCTGCACTTCTGCTGGCCCCCAC 2020456 Query 96957 TTCAACCC-TACATTGCAAAATCACGGCGCACCCAGCGCCATTGAACGCCACGTTGGTGA 97015 |||||||| | || | | || ||||| || |||| || | || || ||||||||||| Sbjct 2020455 TTCAACCCCTTCAA-GAAGAACCACGGTGCCCCCACCGACTCCGAGCGACACGTTGGTGA 2020397 Query 97016 TCTGGGCAACGT 97027 || || ||||| Sbjct 2020396 CCTCGGAAACGT 2020385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934187665592