Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq5 122 3e-22 seq3 84.2 7e-11 >seq5 Length=2767003 Score = 122 bits (134), Expect = 3e-22 Identities = 401/608 (66%), Gaps = 19/608 (3%) Strand=Plus/Plus Query 443271 CGGTTCGTCTTGTTCCCCGTTCAGCATCCCGACATCTACGACATGTACAA-ACGACAAGT 443329 ||||| || | |||||| | ||| | | ||| |||| | |||||||| | | | | Sbjct 1871854 CGGTTTGTGCTCTTCCCCATCCAGTACCACGAGATCTGGCAGATGTACAAGAAGGCC-GA 1871912 Query 443330 GGCCCAGTTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGA 443389 ||| || |||||| ||||||||||||||| ||||||| ||| ||| ||| | | Sbjct 1871913 GGCTTCTTTCTGGACCGCCGAGGAGATTGATCTCGGCAAGGACATGGGCGACTGGGAGAA 1871972 Query 443390 ACGACTATCTAGCCATGAACGCGATTTCTTCAAAT-GCATCT--TGGCCTTCTTTGCACC 443446 || || | | | || || ||||||| | ||| | ||||||||||||| | Sbjct 1871973 CCGGCTCAACAACGACGAGCGG---TTCTTCATCTCGCACGTGCTGGCCTTCTTTGCTGC 1872029 Query 443447 GAGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACAC 443506 ||| ||||| || ||||| |||||| ||| |||| || ||| | | | Sbjct 1872030 TTCCGATGGTATTGTGAACGAGAACCTGGTGGAGCGATTCTCCGGCGAGGTGCAGGTCCC 1872089 Query 443507 CGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTA 443566 ||||||| | |||||||| ||||| | ||||||||||| ||| | || || Sbjct 1872090 CGAGGCCAAGTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAAACGTA 1872149 Query 443567 CAGTCAGTTGATCAAGACACTAATTCCGAACGAAGACGAACAGCGGTCC-ATCTTCTCAT 443625 | | | ||||| | ||| || || || || | | |||| || | || ||| Sbjct 1872150 CTCGCTGCTGATCGACACA-TACATC--AAGGACCCCAAGGAGCGAACCTACCTGTTCAA 1872206 Query 443626 CGT--TCATGACCACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGG--CTC 443681 || || ||||| || |||||| | ||| | |||||| ||||| ||| Sbjct 1872207 CGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAAGTGGATCTC 1872266 Query 443682 GAACGAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTG 443741 |||| | || | ||| | |||||| || |||| ||||| | ||||| || | Sbjct 1872267 CGACGACGAG-TCG-ACCTTTGGCGAGCGGCTGATCGCCTTTGCCGCCGTCGAGGGCATC 1872324 Query 443742 TTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGG 443801 || || |||| | || ||||||||||||||| | || ||||| || || |||| ||| Sbjct 1872325 TTCTTCTCCGGCT-CGTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGG 1872383 Query 443802 TCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTG 443861 || ||||| ||||| || ||| || ||||||||| |||| |||||| ||||| Sbjct 1872384 CCTCACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACCGACTTTGCCTG 1872443 Query 443862 TCTTCTCT 443869 ||| |||| Sbjct 1872444 TCTGCTCT 1872451 >seq3 Length=2943663 Score = 84.2 bits (92), Expect = 7e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 254972 GGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGC 255031 |||||| | || ||| || | |||||||||||| || || || ||||| || || || Sbjct 1832417 GGCATTGTTCCCATGCTCAGGGTGTTCAACAACACCGCACGGTATGTCGACCAGGGTGGA 1832358 Query 255032 GGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATT 255085 ||| || || |||||||| ||||||| |||||||| ||||| ||||| ||| Sbjct 1832357 AACAAGCGTCCCGGAGCGTTTGCCATCTATCTGGAGCCCTGGCATGCCGATATT 1832304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335165627245