Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 264 1e-65 seq5 123 3e-23 >seq2 Length=4160336 Score = 264 bits (292), Expect = 1e-65 Identities = 1147/1787 (64%), Gaps = 59/1787 (3%) Strand=Plus/Minus Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390 ||||||| || || ||| ||| | | ||| || |||||||| ||||||||||| | Sbjct 4112166 TGAACTGGATGGGGGCGGCAGCAGCCATGGTTCGCAGGTAGTACATACCGGTCTTGAGAC 4112107 Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 110450 | | ||||| |||| | ||||| |||| ||||||| ||| || || | ||| Sbjct 4112106 CCTTCTTCCAGCCGTAGAAGTGCATGGAAGTGAGCTTGCCCATGGTGGGGTCCTTGATGT 4112047 Query 110451 AGAGGTTCA--TACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAAT 110508 || ||| | ||| ||| |||||||||||| | || | || ||||| || || Sbjct 4112046 GGATGTTGAGGGACTGGGAC--TGGTCAATGAAGGGGGATCGGTCGGCAGCCATCTCGAT 4111989 Query 110509 GACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGAT 110568 || |||| ||| ||||| || || || || | |||||| || | ||||| Sbjct 4111988 GATTCGCTTCTGAGAAATCTCCCACACGGTCTTGTACAGGTCCTTGATCTCCTGGGGGAT 4111929 Query 110569 ATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGA 110628 | | ||| ||||| | ||| || | ||| || | | |||||| || | Sbjct 4111928 GTTGGGGATGTTCTGCACGGATCCGTTGTCGGCCACGATTCGGTTCTTCATGGTCTCGTT 4111869 Query 110629 CCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACC 110688 ||| ||||||| || ||||| |||| || ||||||||| |||||||| Sbjct 4111868 CCACAGACCAACCTCAACCAGGTCCTTGAGCAGCCAGGGGTTGACAATCTGGAACTCACC 4111809 Query 110689 TGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACC 110748 || || || || ||| ||||| | ||||| || || ||||| || || || Sbjct 4111808 AGCAAGCACTCGTCGAGAGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGAAGCC 4111749 Query 110749 CAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACC 110808 | || || | ||||| || || ||||| || |||| || || ||| || | || Sbjct 4111748 GAGAATCTGAGAAGTGGAAGCAGTAGGCATGGGGGCCACCAGCAGCGAGTTTCGCATTCC 4111689 Query 110809 CTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCT----TGGTTTCAC 110864 ||| | |||| |||||||| | ||||| || | ||||| || |||| Sbjct 4111688 AGTCTTCATGATCTTGGCCTTGAGATCGTCCCACTCCCA---GAGCTCGGAGGGAGTCAC 4111632 Query 110865 CTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCAT 110924 || ||||| ||||||||| || | || | ||| || ||||| |||| ||||| || | Sbjct 4111631 GTT-CCACAGGTCAAACTGCAGGTCACCCTTGGAGGCAGGAGAGCCCTGGAAGGTCTCGT 4111573 Query 110925 AGGAACCTTGGGCTTCA---GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGG 110981 | | ||| | | ||| |||| || | ||||| | || |||| || |||| Sbjct 4111572 AAGCACC---GTCCTCAAGGGCCATCTCGTAAGAAGCCTCAACGGCACCGTGGTAGATGG 4111516 Query 110982 TTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAG-CGGCAC 111040 | || ||||| | || | || |||||| || || || || || | | || ||| Sbjct 4111515 TCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCCTCGGACTCGAA-GGGCAGTCGGAGG 4111457 Query 111041 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 111100 || || ||| || ||||| || ||||||| | |||| |||| ||||||||| || Sbjct 4111456 GCCATGAAGGTATCAGCCAGACCCTGGACACCCAGAGCAATGGGTCGGTGTCGCATGTTG 4111397 Query 111101 GACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTT 111157 ||||| | | |||| || || || | |||| |||||||| ||| || ||| Sbjct 4111396 GACTT---CTTGGCCTCAGGGACAGGGTAGTAGTTTCGGTCAATGATGGCGTTGAGGTTT 4111340 Query 111158 TTGGTAACAATCTTTGTGATTTCATGAAG-TTTTTCA--TAATCAAAAGTGCGAGTCTCT 111214 || | ||| | || || || || || || | | | || | | ||||| Sbjct 4111339 CGCACAATCACCTTGGCAATATCGTGCAGCTTCTTGAAGTCGTAGAAGGAGTTGGTCTCG 4111280 Query 111215 TC---ATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCC 111271 || | ||||| | | || || ||||| || |||| ||||| ||||| |||||| Sbjct 4111279 TCTCGAGTGACAAAGGTGGGCAGAGCGATGGAAGCCAGGTTGCAGACAGCGACCTCATCA 4111220 Query 111272 TTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTC 111331 | | |||||| | ||| || ||| | ||||||| ||| || || |||| ||| Sbjct 4111219 GGAGAAGAGTACTCGACAATCTCGCAACACAGGTTGGAAGACTTGATGGTACCCAGGTTC 4111160 Query 111332 TTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 111391 |||||||| ||| |||||| || ||||||||||||||| |||| | || | ||| Sbjct 4111159 TTTTGGTTGGACTTTCGGTTGCAGGCGTCCTTGTAGAGCATGAAGGGGTTACCGGACTCG 4111100 Query 111392 GTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGG--CGTTGGCC 111448 ||||| | | ||||| | ||| | | || | ||| || |||| ||| | || Sbjct 4111099 GTCTGGCAGTCCAGAATGTGGTACCACAGCTTCTG-GGCAGG---GATGGTTCGTCGACC 4111044 Query 111449 -CGTCCCTCCGCCTCGTACTTTGTGTAGAG-GGCTTCAAACTCCTCACCCACCGCGTCGG 111506 || |||||| |||||||| ||| || |||| ||||| ||||| |||| Sbjct 4111043 TCGGCCCTCCTTCTCGTACTGCTCGTACAGCTGCTT-GAACTCGTCACCGTAGACGTCAT 4110985 Query 111507 AGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTC--CTCAACCCG 111564 ||| || || || || || || | |||| ||| | | | ||| ||| || || Sbjct 4110984 CGAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCACT--CGGCGTTCTGCTCGACTCG 4110927 Query 111565 CTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTC 111624 || |||||| ||||| || ||||| || | || ||||||| || ||| || Sbjct 4110926 CTCCATGAACAGGTCGGGGATCCAGAGAGCCAGGAACAGATCTCGGGCTCGGATCTCCTC 4110867 Query 111625 GTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAG 111684 | ||| ||||| ||| | ||| |||||| | || || ||||||| ||||| || Sbjct 4110866 CTTACCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGACGTCATCGTGCCAGGGCTCCAG 4110807 Query 111685 ATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTG 111737 || | || | | ||| ||| | | | ||| || | || || || || | Sbjct 4110806 GTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCTCCC----TGGTCGACGTATCGAGCGG 4110751 Query 111738 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA 111797 || ||| | || || ||||| || | ||||| | || ||| || || || || Sbjct 4110750 TGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTGGTTCCGGCAA 4110691 Query 111798 TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG 111857 | ||| |||||| | | |||||| || |||||||| ||||| |||| | Sbjct 4110690 TGTAGGATCCGGTGGCTCGGATGTTGTGGATGGACAGACCAATACCTCCAGCGGACTTGG 4110631 Query 111858 AGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGG 111917 |||| | ||||| | | || || | ||||| |||| ||| ||||| ||||| || Sbjct 4110630 AGATGAGAGCACAAGTCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCGTCCTTCATGT 4110571 Query 111918 CGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTG 111977 || |||||| || |||||||| || || || || || ||| | ||||| || | Sbjct 4110570 TGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCCTGCGTTGTACAGGGTAGGGG 4110511 Query 111978 TTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATG 112036 ||||| |||| ||| | || ||||| | || ||| ||||| | | | ||||| Sbjct 4110510 AAGCGTGGGTGAA-GTACTTCTGAGACATGTAGTTGTAGGTCTCAATGGCTCGGGCAATG 4110452 Query 112037 TCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | || |||||||| |||| | || ||||||| ||| | ||| || Sbjct 4110451 TTGTCGCCGTGGATACCGACAGACACTCGCATGATCATCTGCTGGGG 4110405 >seq5 Length=2767003 Score = 123 bits (136), Expect = 3e-23 Identities = 298/446 (67%), Gaps = 14/446 (3%) Strand=Plus/Minus Query 122380 ACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 122439 ||||||||||| |||||||||||||| || | || ||||| ||||| ||||| || Sbjct 1872719 ACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTTCTCCATGAAGTCGAAG 1872660 Query 122440 GGATTCTTCGCGTTCCAAA---TGG-GTGGC--ACCCCAACTTGTTTGAGGAGACGATCC 122493 || || | | ||| | | ||| || || | |||| || ||||| || Sbjct 1872659 GGGTTGGTGGAGTTGTAGACCTTGGAGTTGCCGAGAGCAACC------AGCAGACGGTCG 1872606 Query 122494 GACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGG 122553 | ||| |||||||||||| | |||| || | |||||| |||| || || || Sbjct 1872605 GCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATTCCGAGCAGTCCGCAGGGC 1872546 Query 122554 AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATA 122613 || ||||| | |||| | | ||| || |||| ||||| | | | | | || | Sbjct 1872545 AGAGCGTCGGTCAGGAACTCCTGCTCGATACCAACGGCCTCGACAATCACGTCCTCGACA 1872486 Query 122614 GTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTCCACGGCAAACTCCTGGTG 122672 | | | | ||||| || | | | || | ||||||| |||||| || ||| Sbjct 1872485 ATCTTCTTGGAGGGTCGGTT-CTCGAGGTGCGAGAAGAGCAGACAGGCAAAGTCGGTGTG 1872427 Query 122673 GAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCG 122732 |||||||| |||||||| || || || || |||||| || || ||||||||||| || Sbjct 1872426 CAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCG 1872367 Query 122733 CTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGC 122792 |||||| | ||| | || | | ||| || |||||||||||||| ||||| || || Sbjct 1872366 CTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAAGATGCCCTCGACGGCGGC 1872307 Query 122793 AAACGCAAAAAGGCGTTCGGCGAAGG 122818 ||| || | || || ||| | |||| Sbjct 1872306 AAAGGCGATCAGCCGCTCGCCAAAGG 1872281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031678133600