Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5 145 9e-30 >seq5 Length=2767003 Score = 145 bits (160), Expect = 9e-30 Identities = 349/520 (67%), Gaps = 16/520 (3%) Strand=Plus/Minus Query 129737 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 129796 |||||||||||||||||||| ||||| ||| ||| ||| |||||||| || || || Sbjct 1872719 ACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTTCTCCATGAAGTCGAAG 1872660 Query 129797 GGGTTCTTTGAGTTCCAAA--TTGCTG--GC--ACTCCAATCTGTTTGAGGAGACGATCC 129850 ||||| | ||||| | | ||| | || | ||| | || ||||| || Sbjct 1872659 GGGTTGGTGGAGTTGTAGACCTTGGAGTTGCCGAGAGCAACC------AGCAGACGGTCG 1872606 Query 129851 GAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGG 129910 | ||| |||||||||||| |||| || || |||||| |||| || || || Sbjct 1872605 GCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATTCCGAGCAGTCCGCAGGGC 1872546 Query 129911 AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATG 129970 || ||||| | |||| ||| ||| || | || || || | | | | | | Sbjct 1872545 AGAGCGTCGGTCAGGAACTCCTGCTCGATACCAACGGCCTCGACAATCACGTCCTCGACA 1872486 Query 129971 GTCTCCGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTCCTGGTG 130029 ||| | || |||| || | | | || | |||||| |||||| || ||| Sbjct 1872485 ATCTTCTTGGAGGGTCGGTT-CTCGAGGTGCGAGAAGAGCAGACAGGCAAAGTCGGTGTG 1872427 Query 130030 GAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCG 130089 ||||||||||| ||||||||||| || || |||||| || || ||||||||||| || Sbjct 1872426 CAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCG 1872367 Query 130090 CTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGC 130149 |||||| | |||||| || | || ||||| ||||||||||| ||||| || || Sbjct 1872366 CTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAAGATGCCCTCGACGGCGGC 1872307 Query 130150 GAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA-AACCACTTCATCGCCC 130208 || || | || ||||| |||||| || | | || | | |||||| | ||||| Sbjct 1872306 AAAGGCGATCAGCCGCTCGCCAAAGG-TCGACTCGTCGTCGGAGATCCACTTGAGCGCCC 1872248 Query 130209 ACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | | ||||| |||| ||| || |||| ||||| ||| || Sbjct 1872247 AGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 1872208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434883051960