Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016-
03-01] 41 sequences; 21,900,276 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq2 293 3e-74
seq3 158 1e-33
>seq2
Length=4160336
Score = 293 bits (324), Expect = 3e-74
Identities = 429/603 (71%), Gaps = 4/603 (1%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| || | | ||||||||||| ||| || | || | | |||||| |||
Sbjct 4110418 TCATGCGAGTGTCTGTCGGTATCCACGGCGACAACATTGCCCGAGCCATTGAGACCTACA 4110477
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
||| ||| || |||||||| || ||||| | || ||||||| |||||| || ||
Sbjct 4110478 ACTACATGTCTCAGAAGTACTTCACCCACGCTTCCCCTACCCTGTACAACGCAGGAACCC 4110537
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| || ||||||||| || ||||| || |||||||| ||||| ||||||||||
Sbjct 4110538 CCCAGCCCCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATCGACGGCA 4110597
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-- 53430
||||||| || |||||| ||||| | ||||||||||| | || ||||| ||| |
Sbjct 4110598 TCTACGACACCCTCAAGACTTGTGCTCTCATCTCCAAGTCCGCTGGAGGTATTGGTCTGT 4110657
Query 53431 CCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
||| | | | ||| |||| || | ||| | || || || ||||| | || |
Sbjct 4110658 CCA-TCCAC-AACATCCGAGCCACCGGATCCTACATTGCCGGAACCAACGGTACCTCCAA 4110715
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| |||||||| ||||| || |||| ||||||||| || || |||||| ||||||| ||
Sbjct 4110716 CGGTATCGTGCCCATGCTGCGTGTCTACAACAACACCGCTCGATACGTCGACCAGGGAGG 4110775
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
||||| || | || ||||| ||||| ||||| ||||||| ||| | | ||
Sbjct 4110776 CAACAAGCGACCCGGAGCCTTTGCCATGTACCTGGAGCCCTGGCACGATGACGTCTTCGA 4110835
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670
||| ||||||||| ||| || ||| | || ||||| || ||| || |||||
Sbjct 4110836 GTTCTGCGAGCTGCGAAAGAACCACGGTAAGGAGGAGATCCGAGCCCGAGATCTGTTCCT 4110895
Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730
||||| ||||| || ||||| |||||| | || ||| || ||| |||||| ||
Sbjct 4110896 GGCTCTCTGGATCCCCGACCTGTTCATGGAGCGAGTCGAGCAGAACGCCGAGTGGACTCT 4110955
Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790
|||||||| ||||||||||| |||||| | | ||||||||||| ||||| || || |
Sbjct 4110956 CATGTGCCCCAACGAGTGCCCTGGCCTCGATGACGTCTACGGTGACGAGTTCAAGCAGCT 4111015
Query 53791 GTA 53793
|||
Sbjct 4111016 GTA 4111018
Score = 154 bits (170), Expect = 2e-32
Identities = 303/445 (68%), Gaps = 5/445 (1%)
Strand=Plus/Plus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
|| ||||| ||||| ||||| || ||||| || || || || ||||||| | ||| |
Sbjct 4111695 CGAAACTCGCTGCTGGTGGCCCCCATGCCTACTGCTTCCACTTCTCAGATTCTCGGCTTC 4111754
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603
|||||| |||||||| ||||| ||||||| ||| || || || || ||||||
Sbjct 4111755 AACGAGTGCTTCGAGCCCTACACCTCCAACATTTACTCTCGACGAGTGCTTGCTGGTGAG 4111814
Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663
|| || ||||| || ||||||||||| || | ||||||| |
Sbjct 4111815 TTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTGGTTGAGGTTGGTCTGTGGAACGAG 4111874
Query 55664 CAGATCAAGA-CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCC 55719
|| |||| | || || ||| || || ||||| ||||| | | || ||
Sbjct 4111875 ACCATGAAGAACCGA-ATCGTGGCCGACAACGGATCCGTGCAGAACATCCCCAACATCCC 4111933
Query 55720 TCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGA 55779
| | ||||||| | ||| ||| |||||||||||| | |||||| | | || ||
Sbjct 4111934 CCAGGAGATCAAGGACCTGTACAAGACCGTGTGGGAGATTTCTCAGAAGCGAATCATCGA 4111993
Query 55780 CATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGA 55839
||| ||| || || | | ||| |||||||||||||| || |||||| ||| |
Sbjct 4111994 GATGGCTGCCGACCGATCCCCCTTCATTGACCAGTCCCAGTCCCTCAACATCCACATCAA 4112053
Query 55840 GAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAA 55899
| | || | ||| |||| | | || |||||||| ||||| ||||||||||| |||||
Sbjct 4112054 GGACCCCACCATGGGCAAGCTCACTTCCATGCACTTCTACGGCTGGAAGAAGGGTCTCAA 4112113
Query 55900 GACGGGTATGTACTATCTGCGGACC 55924
||| ||||||||||| ||||| |||
Sbjct 4112114 GACCGGTATGTACTACCTGCGAACC 4112138
>seq3
Length=2943663
Score = 158 bits (174), Expect = 1e-33
Identities = 452/688 (66%), Gaps = 8/688 (1%)
Strand=Plus/Minus
Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332
|| || ||||| | || || || ||||| || ||||| || || ||||| |
Sbjct 1832636 TTCACACACGCTTCTCCCACGCTTTTCAATGCCGGTACTCCCCAGGGACAACTGTCGTCC 1832577
Query 53333 TGCTTCCTGGTGGCGATGAAGGAT--GACTCGATCGACGGCATCTACGAGACGCTCAAGG 53390
|| || |||||||| ||| | || ||||| |||||||| |||||||| || ||||||
Sbjct 1832576 TGTTTTCTGGTGGCTATG--GCATCCGACTCCATCGACGGAATCTACGATACCCTCAAGA 1832519
Query 53391 AGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCG-AACGTCCGT 53449
|||||| || ||||| || | | || ||||||||| | || | || || || |
Sbjct 1832518 CGTGTGCGCAAATCTCGAAAACGGCTGGAGGTATCGGTCTGCA-TATTCATAATATCAGG 1832460
Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509
|| || || | || | ||| | | || || ||| || || || ||||||
Sbjct 1832459 GCCAAGGGTGCTATCATTACTGGGTCTCAAGGAAGGTCCAGTGGCATTGTTCCCATGCTC 1832400
Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569
| || ||||||||||| || ||||| ||| |||||||||| ||||| || ||
Sbjct 1832399 AGGGTGTTCAACAACACCGCACGGTATGTCGACCAGGGTGGAAACAAGCGTCCCGGAGCG 1832340
Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629
|| |||||||| || ||||| ||||| ||||| ||| | || || || | |||||
Sbjct 1832339 TTTGCCATCTATCTGGAGCCCTGGCATGCCGATATTCTCGATTTCCTGAACCTGCGGAAA 1832280
Query 53630 AATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGA 53688
|| || || | || |||| | | |||||||| ||| || ||||| | |||||
Sbjct 1832279 AACCACGGAGCAGAGGAGAACAGAGCAAGAGACCTGTTCTAC-GCATTGTGGGTGCCGGA 1832221
Query 53689 CCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTG 53748
||| |||||| | ||| || | | ||| |||||| | || | || || || ||
Sbjct 1832220 CCTGTTCATGAAGCGGGTCGAAAGAGGCGAAAAGTGGTCCTTGTTCTGTCCAAAGAAGGC 1832161
Query 53749 CCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGT 53808
||| || || | | || | || |||||| | ||| || | |||||
Sbjct 1832160 CCCTGGGCTGGAAGACGTGTGGGGACCTGAGTTTGAGCAGAAATACGAGGAGTACGAGAA 1832101
Query 53809 TCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAG 53868
||||| | ||| | || |||| |||| ||| | | | || ||||||| |||
Sbjct 1832100 AAAGGGCTTGTTCAACGCGCAGATCAACGCGCAGGAGCTGTTCAAGGCGATCCTCACGAG 1832041
Query 53869 CCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAA 53928
||| | || || ||| |||| |||| ||||||||| ||||| ||| |||
Sbjct 1832040 TCAGATCGAAACCGGAGGACCGTTCATGCTCTACAAGGACAGCTGCAACGCAAAGTCCAA 1831981
Query 53929 CCAGAAGAACATCGGCGTCATCAAATCG 53956
|||| ||||| | ||| |||||| |||
Sbjct 1831980 CCAGCAGAACCTGGGCACCATCAAGTCG 1831953
Score = 116 bits (128), Expect = 4e-21
Identities = 302/449 (67%), Gaps = 15/449 (3%)
Strand=Plus/Minus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
|||||||| ||||| ||||| || ||||| || || || ||| ||||||| | ||| ||
Sbjct 1831427 CGCAACTCGCTGCTGGTGGCTCCTATGCCTACGGCTTCCACGTCTCAGATTCTCGGCCAC 1831368
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603
|||||| |||||||| ||||| ||||||||||||| || || | |||||| |||
Sbjct 1831367 AACGAGTGTTTCGAGCCATACACCTCCAACATCTACCTTCGTCGAGTTCAAGCAGGCGAG 1831308
Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663
|| || | ||||| | || | ||||| || ||| | || ||||||| |
Sbjct 1831307 TTCCTCGTCGTCAACCACTGGCTGATGAAGGATCTCATCAAGCTGGGCATGTGGAACGAG 1831248
Query 55664 CAGATCAAGA--CGGATATTGTGCG-GAACGG-GGGGTCC-GTCCAGAATCTGGAGATTC 55718
||||| || | || || | || ||||| | ||| ||||| | | ||||||
Sbjct 1831247 CAGATGAAAAACCGAATCATCCACGACAACGGCTCGATCCAGTCCATCACC--CAGATTC 1831190
Query 55719 CTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG--AAGAGTCTGAT 55776
| || || | ||||| || | ||||| || || | ||| | ||
Sbjct 1831189 CCGAAAACATCCGGGCCGTGTACCGAACCGCCTGGGAAAT--CAAGGCCCGGAGCATCAT 1831132
Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836
|||||| |||| ||| | | ||||| |||||||| ||||| || |||||||||||
Sbjct 1831131 CGACATGGCAGCTGCTCGAGCGCCCTACATTGACCAGTCGCAGTCGCTCAACATCTTCAT 1831072
Query 55837 G-GAG-AATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894
| | | |||| ||| | ||| | | | ||||| || |||| ||||| | |||
Sbjct 1831071 GCGCGAAATCACCCAC--GGCAAAATCACAGCCATGCATTTCCACGGCTGGAAAATGGGC 1831014
Query 55895 CTCAAGACGGGTATGTACTATCTGCGGAC 55923
||||| || || |||||||| ||||| ||
Sbjct 1831013 CTCAAAACAGGCATGTACTACCTGCGTAC 1830985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215719551800
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