Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 293 3e-74 seq3 158 1e-33 >seq2 Length=4160336 Score = 293 bits (324), Expect = 3e-74 Identities = 429/603 (71%), Gaps = 4/603 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || | | ||||||||||| ||| || | || | | |||||| ||| Sbjct 4110418 TCATGCGAGTGTCTGTCGGTATCCACGGCGACAACATTGCCCGAGCCATTGAGACCTACA 4110477 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 ||| ||| || |||||||| || ||||| | || ||||||| |||||| || || Sbjct 4110478 ACTACATGTCTCAGAAGTACTTCACCCACGCTTCCCCTACCCTGTACAACGCAGGAACCC 4110537 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || || ||||||||| || ||||| || |||||||| ||||| |||||||||| Sbjct 4110538 CCCAGCCCCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATCGACGGCA 4110597 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-- 53430 ||||||| || |||||| ||||| | ||||||||||| | || ||||| ||| | Sbjct 4110598 TCTACGACACCCTCAAGACTTGTGCTCTCATCTCCAAGTCCGCTGGAGGTATTGGTCTGT 4110657 Query 53431 CCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 ||| | | | ||| |||| || | ||| | || || || ||||| | || | Sbjct 4110658 CCA-TCCAC-AACATCCGAGCCACCGGATCCTACATTGCCGGAACCAACGGTACCTCCAA 4110715 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || |||||||| ||||| || |||| ||||||||| || || |||||| ||||||| || Sbjct 4110716 CGGTATCGTGCCCATGCTGCGTGTCTACAACAACACCGCTCGATACGTCGACCAGGGAGG 4110775 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | || ||||| ||||| ||||| ||||||| ||| | | || Sbjct 4110776 CAACAAGCGACCCGGAGCCTTTGCCATGTACCTGGAGCCCTGGCACGATGACGTCTTCGA 4110835 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 ||| ||||||||| ||| || ||| | || ||||| || ||| || ||||| Sbjct 4110836 GTTCTGCGAGCTGCGAAAGAACCACGGTAAGGAGGAGATCCGAGCCCGAGATCTGTTCCT 4110895 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 ||||| ||||| || ||||| |||||| | || ||| || ||| |||||| || Sbjct 4110896 GGCTCTCTGGATCCCCGACCTGTTCATGGAGCGAGTCGAGCAGAACGCCGAGTGGACTCT 4110955 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| ||||||||||| |||||| | | ||||||||||| ||||| || || | Sbjct 4110956 CATGTGCCCCAACGAGTGCCCTGGCCTCGATGACGTCTACGGTGACGAGTTCAAGCAGCT 4111015 Query 53791 GTA 53793 ||| Sbjct 4111016 GTA 4111018 Score = 154 bits (170), Expect = 2e-32 Identities = 303/445 (68%), Gaps = 5/445 (1%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || ||||| ||||| ||||| || ||||| || || || || ||||||| | ||| | Sbjct 4111695 CGAAACTCGCTGCTGGTGGCCCCCATGCCTACTGCTTCCACTTCTCAGATTCTCGGCTTC 4111754 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| ||||||| ||| || || || || |||||| Sbjct 4111755 AACGAGTGCTTCGAGCCCTACACCTCCAACATTTACTCTCGACGAGTGCTTGCTGGTGAG 4111814 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || ||||| || ||||||||||| || | ||||||| | Sbjct 4111815 TTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTGGTTGAGGTTGGTCTGTGGAACGAG 4111874 Query 55664 CAGATCAAGA-CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCC 55719 || |||| | || || ||| || || ||||| ||||| | | || || Sbjct 4111875 ACCATGAAGAACCGA-ATCGTGGCCGACAACGGATCCGTGCAGAACATCCCCAACATCCC 4111933 Query 55720 TCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGA 55779 | | ||||||| | ||| ||| |||||||||||| | |||||| | | || || Sbjct 4111934 CCAGGAGATCAAGGACCTGTACAAGACCGTGTGGGAGATTTCTCAGAAGCGAATCATCGA 4111993 Query 55780 CATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGA 55839 ||| ||| || || | | ||| |||||||||||||| || |||||| ||| | Sbjct 4111994 GATGGCTGCCGACCGATCCCCCTTCATTGACCAGTCCCAGTCCCTCAACATCCACATCAA 4112053 Query 55840 GAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAA 55899 | | || | ||| |||| | | || |||||||| ||||| ||||||||||| ||||| Sbjct 4112054 GGACCCCACCATGGGCAAGCTCACTTCCATGCACTTCTACGGCTGGAAGAAGGGTCTCAA 4112113 Query 55900 GACGGGTATGTACTATCTGCGGACC 55924 ||| ||||||||||| ||||| ||| Sbjct 4112114 GACCGGTATGTACTACCTGCGAACC 4112138 >seq3 Length=2943663 Score = 158 bits (174), Expect = 1e-33 Identities = 452/688 (66%), Gaps = 8/688 (1%) Strand=Plus/Minus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || || ||||| | || || || ||||| || ||||| || || ||||| | Sbjct 1832636 TTCACACACGCTTCTCCCACGCTTTTCAATGCCGGTACTCCCCAGGGACAACTGTCGTCC 1832577 Query 53333 TGCTTCCTGGTGGCGATGAAGGAT--GACTCGATCGACGGCATCTACGAGACGCTCAAGG 53390 || || |||||||| ||| | || ||||| |||||||| |||||||| || |||||| Sbjct 1832576 TGTTTTCTGGTGGCTATG--GCATCCGACTCCATCGACGGAATCTACGATACCCTCAAGA 1832519 Query 53391 AGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCG-AACGTCCGT 53449 |||||| || ||||| || | | || ||||||||| | || | || || || | Sbjct 1832518 CGTGTGCGCAAATCTCGAAAACGGCTGGAGGTATCGGTCTGCA-TATTCATAATATCAGG 1832460 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509 || || || | || | ||| | | || || ||| || || || |||||| Sbjct 1832459 GCCAAGGGTGCTATCATTACTGGGTCTCAAGGAAGGTCCAGTGGCATTGTTCCCATGCTC 1832400 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569 | || ||||||||||| || ||||| ||| |||||||||| ||||| || || Sbjct 1832399 AGGGTGTTCAACAACACCGCACGGTATGTCGACCAGGGTGGAAACAAGCGTCCCGGAGCG 1832340 Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 || |||||||| || ||||| ||||| ||||| ||| | || || || | ||||| Sbjct 1832339 TTTGCCATCTATCTGGAGCCCTGGCATGCCGATATTCTCGATTTCCTGAACCTGCGGAAA 1832280 Query 53630 AATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGA 53688 || || || | || |||| | | |||||||| ||| || ||||| | ||||| Sbjct 1832279 AACCACGGAGCAGAGGAGAACAGAGCAAGAGACCTGTTCTAC-GCATTGTGGGTGCCGGA 1832221 Query 53689 CCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTG 53748 ||| |||||| | ||| || | | ||| |||||| | || | || || || || Sbjct 1832220 CCTGTTCATGAAGCGGGTCGAAAGAGGCGAAAAGTGGTCCTTGTTCTGTCCAAAGAAGGC 1832161 Query 53749 CCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGT 53808 ||| || || | | || | || |||||| | ||| || | ||||| Sbjct 1832160 CCCTGGGCTGGAAGACGTGTGGGGACCTGAGTTTGAGCAGAAATACGAGGAGTACGAGAA 1832101 Query 53809 TCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAG 53868 ||||| | ||| | || |||| |||| ||| | | | || ||||||| ||| Sbjct 1832100 AAAGGGCTTGTTCAACGCGCAGATCAACGCGCAGGAGCTGTTCAAGGCGATCCTCACGAG 1832041 Query 53869 CCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAA 53928 ||| | || || ||| |||| |||| ||||||||| ||||| ||| ||| Sbjct 1832040 TCAGATCGAAACCGGAGGACCGTTCATGCTCTACAAGGACAGCTGCAACGCAAAGTCCAA 1831981 Query 53929 CCAGAAGAACATCGGCGTCATCAAATCG 53956 |||| ||||| | ||| |||||| ||| Sbjct 1831980 CCAGCAGAACCTGGGCACCATCAAGTCG 1831953 Score = 116 bits (128), Expect = 4e-21 Identities = 302/449 (67%), Gaps = 15/449 (3%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| ||||| ||||| || ||||| || || || ||| ||||||| | ||| || Sbjct 1831427 CGCAACTCGCTGCTGGTGGCTCCTATGCCTACGGCTTCCACGTCTCAGATTCTCGGCCAC 1831368 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| ||||||||||||| || || | |||||| ||| Sbjct 1831367 AACGAGTGTTTCGAGCCATACACCTCCAACATCTACCTTCGTCGAGTTCAAGCAGGCGAG 1831308 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || | ||||| | || | ||||| || ||| | || ||||||| | Sbjct 1831307 TTCCTCGTCGTCAACCACTGGCTGATGAAGGATCTCATCAAGCTGGGCATGTGGAACGAG 1831248 Query 55664 CAGATCAAGA--CGGATATTGTGCG-GAACGG-GGGGTCC-GTCCAGAATCTGGAGATTC 55718 ||||| || | || || | || ||||| | ||| ||||| | | |||||| Sbjct 1831247 CAGATGAAAAACCGAATCATCCACGACAACGGCTCGATCCAGTCCATCACC--CAGATTC 1831190 Query 55719 CTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG--AAGAGTCTGAT 55776 | || || | ||||| || | ||||| || || | ||| | || Sbjct 1831189 CCGAAAACATCCGGGCCGTGTACCGAACCGCCTGGGAAAT--CAAGGCCCGGAGCATCAT 1831132 Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836 |||||| |||| ||| | | ||||| |||||||| ||||| || ||||||||||| Sbjct 1831131 CGACATGGCAGCTGCTCGAGCGCCCTACATTGACCAGTCGCAGTCGCTCAACATCTTCAT 1831072 Query 55837 G-GAG-AATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894 | | | |||| ||| | ||| | | | ||||| || |||| ||||| | ||| Sbjct 1831071 GCGCGAAATCACCCAC--GGCAAAATCACAGCCATGCATTTCCACGGCTGGAAAATGGGC 1831014 Query 55895 CTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||||| || || |||||||| ||||| || Sbjct 1831013 CTCAAAACAGGCATGTACTACCTGCGTAC 1830985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215719551800