Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 297 2e-75 seq1 179 4e-40 seq3 132 5e-26 >seq2 Length=4160336 Score = 297 bits (328), Expect = 2e-75 Identities = 1133/1752 (65%), Gaps = 59/1752 (3%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || ||||| |||||||| || |||||||| ||||||||||||||||| | |||||| ||| Sbjct 4112137 GTTCGCAGGTAGTACATACCGGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAA 4112078 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||||||| | | ||||||| || ||| |||||| || ||||| ||||| ||| Sbjct 4112077 GTGAGCTTGCCCATGGTGGGGTCCTTGATGTGGATGTTGAGGGACTGGGACTGGTCAATG 4112018 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 || | || || || ||||| || || ||| ||| || | ||| ||||| || || Sbjct 4112017 AAGGGGGATCGGTCGGCAGCCATCTCGATGATTCGCTTCTGAGAAATCTCCCACACGGTC 4111958 Query 80218 CGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGA---TTTTGCACACTGCCACCG 80271 |||| |||| | ||||| || |||| | || ||||| || | Sbjct 4111957 TTGTACAGGTCCTTG---ATCTCCTGGGGGATGTTGGGGATGTTCTGCACGGATCCGTTG 4111901 Query 80272 TCCTTTACAATTTGATTTTTCAATTCAGACGT-CCAGACACCAAGCTTGTGCAGATCTTT 80330 || || ||| | || |||| | ||| ||| | ||||| || ||| || || Sbjct 4111900 TCGGCCACGATTCGGTTCTTCA-TGGTCTCGTTCCACAGACCAACCTCAACCAGGTCCTT 4111842 Query 80331 CACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA-TACA 80386 | || | | ||| |||| || |||| || || || || || ||| || | Sbjct 4111841 GAGCAGCCAGGGGTTGACAATCTGGA---ACTCACCAGCAAGCACTCGTCG-AGAGTAAA 4111786 Query 80387 GGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCG 80446 ||| | ||||| ||||| || ||||||| ||||| ||||||| ||| || | Sbjct 4111785 TGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGAAGCCGAGAATCTGAGAAGTGGAAGCAG 4111726 Query 80447 TCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATAT---CCTCGC 80503 | ||||| ||| | |||| ||| || || |||| || |||| |||| | ||| | Sbjct 4111725 TAGGCATGGGGGCCACCAGCAGCGAGTTTCGCATTCCAGTCTTCATGATCTTGGCCTTGA 4111666 Query 80504 GCAAATCTGACCAAAAATCAA--CCCCAACGCTGTGACC--CCACATGTCGTGCTGCAAG 80559 | ||| | || | || | | | | || || ||||| ||| ||||| | Sbjct 4111665 G---ATC-GTCCCACTCCCAGAGCTCGGAGGGAGTCACGTTCCACAGGTCAAACTGCAGG 4111610 Query 80560 ATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGC 80619 |||| || || ||||| ||| ||| |||||||| | || ||| ||||| | Sbjct 4111609 TCACCCTTGGAGGCAGGAGAGCCCTGGAAGGTCTCGTAAGCACCGTCCTCAAGGGCCATC 4111550 Query 80620 TCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA-CACC 80678 || | || || || ||| |||| || ||| ||| |||| |||| | | | Sbjct 4111549 TCGTAAGAAGCCTCAACGGCACCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTC 4111490 Query 80679 GCGCGCCTG-TGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCT 80737 | |||| | || | ||||| | || | | |||||| |||||||| |||| Sbjct 4111489 TTG-GCCTCCTCGGAC-TCGAAGGGCAGTCGGAGGGCCATGAAGGTATCAGCCAGACCCT 4111432 Query 80738 GAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGT 80797 | || || | || || || ||||| ||| |||| || || |||||| || | |||| Sbjct 4111431 GGACACCCAGAGCAATGGGTCGGTGTCGCATGTTGGACTTCTTGGCCTCAGGGACAGGGT 4111372 Query 80798 AAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAA 80857 | |||| || |||| | ||| ||||| || || ||| | || ||| || | Sbjct 4111371 AGTAGTTTCGGTCAATGATGGCGTTGAGGTTTCGCACAATCACCTTGGCAATATCGTGCA 4111312 Query 80858 GTTTCTGAAAGTCGAA-------TTGGT-TCCCCT----TCACAAATGCCGGAAGGCTCA 80905 | |||| |||||| | ||||| || || | ||||| | || || | Sbjct 4111311 GCTTCTTGAAGTCGTAGAAGGAGTTGGTCTCGTCTCGAGTGACAAAGGTGGGCAGAGCGA 4111252 Query 80906 GGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGC 80965 ||| ||||| ||||| || || ||||| |||| | | ||||||| || || | Sbjct 4111251 TGGAAGCCAGGTTGCAGACAGCGACCTCATCAGGAGAAGAGTACTCGACAATCTCGCAAC 4111192 Query 80966 ACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGT 81025 ||| || |||||||| || ||||||||||| || ||||| ||||| |||||| |||| Sbjct 4111191 ACAGGTTGGAAGACTTGATGGTACCCAGGTTCTTTTGGTTGGACTTTCGGTTGCAGGCGT 4111132 Query 81026 CCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAA 81085 |||||||| |||| | ||| |||||| |||| ||| | | || ||| || ||| | Sbjct 4111131 CCTTGTAGAGCATGAAGGGGTTACCGGACTCGGTCTGGCAGTCCAGAATGTGGTACCACA 4111072 Query 81086 TCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCT 81144 || | || || || | ||| || | | |||| |||| |||| Sbjct 4111071 GCTTCTGGGCAGGGATGGTTCGTCGACCTCGGCCCTCCTTCTCGTACTGCTCGTACAGCT 4111012 Query 81145 TCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204 | | ||||| | |||||| | ||| |||| | ||||||||||| |||||||| || Sbjct 4111011 GCTT-GAACTCGTCACCGTAGACGTCATCGAGGCCAGGGCACTCGTTGGGGCACATGAGA 4110953 Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264 ||| |||| || | ||| || || |||||| ||| ||||||||||| || | Sbjct 4110952 GTCCACTCGGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCAGAGAGCCAGG 4110893 Query 81265 AACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCC 81324 ||||| || ||| || |||||| | ||| ||||| |||| |||| || || Sbjct 4110892 AACAGATCTCGGGCTCGGATCTCCTCCTTACCGTGGTTCTTTCGCAGCTCGCAGAACTCG 4110833 Query 81325 ATGATGTCCGCATGCCATGGCTCCAGATACACGGC----GATC--GACCCCTTGCGACGG 81378 | || ||| | ||||| |||||||| |||| ||| | || | | |||| | Sbjct 4110832 AAGACGTCATCGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGTCGCTTG---TTG 4110776 Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 || ||||||| |||||| || || || ||| | ||||||| ||| || | |||||| Sbjct 4110775 CCTCCCTGGTCGACGTATCGAGCGGTGTTGTTGTAGACACGCAGCATGGGCACGATACCG 4110716 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAA 81498 | || |||||| || || | || || || |||| || | ||| ||| || Sbjct 4110715 TTGGAGGTACCGTTGGTTCCGGCAATGTAGGATCCGGTGGCTCGGATGTTGTGGATGGAC 4110656 Query 81499 AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATT 81558 ||||| || || || | |||| || || ||||||| || | ||| || || || Sbjct 4110655 AGACCAATACCTCCAGCGGACTTGGAGATGAGAGCACAAGTCTTGAGGGTGTCGTAGATG 4110596 Query 81559 CCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCT-TTT 81617 || |||||| || | ||||||| | | |||||| |||||||| ||||| Sbjct 4110595 CCGTCGATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTG-GGGCTGGGG 4110537 Query 81618 TGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTC 81677 | || || ||| |||| || |||| ||||| |||| || | ||||| || Sbjct 4110536 GGTTCCTGCGTTGTACAGGGTAGGGGAAGCGTGGGTGAAGTACTTCTGAGACATGTAGTT 4110477 Query 81678 ATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAA 81737 ||||| || || | || | ||| | ||| ||||| ||||||| || || ||||| | Sbjct 4110476 GTAGGTCTCAATGGCTCGGGCAATGTTGTCGCCGTGGATACCGACAGACACTCGCATGAT 4110417 Query 81738 CATGTACTGGGG 81749 ||| | |||||| Sbjct 4110416 CATCTGCTGGGG 4110405 Score = 187 bits (206), Expect = 3e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||||||||| |||||||| |||||||| || |||||||| ||||| Sbjct 1074822 AATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTC 1074881 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | ||| | || || |||||||||||||||||||| || ||||| Sbjct 1074882 CGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCA 1074941 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || || || |||||||| |||||||| | || ||||| | ||||| || Sbjct 1074942 GCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAA 1075001 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||||| || |||| || || ||||| Sbjct 1075002 CATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGTGG 1075049 Score = 174 bits (192), Expect = 2e-38 Identities = 174/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 ||||||||||||||||||| ||||| |||||||| || || || ||||| ||||| | Sbjct 1737019 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCG 1736960 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | ||||| || | ||| | || || |||||||||||||| ||||| || ||||||| Sbjct 1736959 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGC 1736900 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 |||| || ||||| || || ||||| |||||||| | || || || | ||||| || Sbjct 1736899 AGCGACTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAACA 1736840 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || ||| |||| || || || || Sbjct 1736839 TCCAGAAGGAGTCCACTCTGCACCTTGTCCTGCGACTCCGAGGAGG 1736794 >seq1 Length=4858313 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || || || ||||||||||| Sbjct 3612951 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACCCTCGAGGTTGAGTCCTCC 3612892 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||| | || ||||||||||||||||| ||||| || |||||| Sbjct 3612891 GATACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAG 3612832 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||||||||| |||||||| | || || || | ||||| || Sbjct 3612831 CAGCGACTTATCTTCGCTGGTAAGCAGCTCGAGGACGGACGAACTCTGTCCGACTACAAC 3612772 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| ||||| ||| | || || || ||||| Sbjct 3612771 ATCCAGAAGGAGTCTACTCTCCATCTGGTCCTCCGACTCCGAGGTGG 3612725 Score = 158 bits (174), Expect = 1e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || ||||| || ||||| ||||||||||| Sbjct 3613390 ATGCAGATTTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTCGAGGTTGAGTCCTCC 3613331 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||| | || || |||||||||||||| ||||| || |||||| Sbjct 3613330 GATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 3613271 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| ||||||||||| || ||||||| || ||||| | ||||| || Sbjct 3613270 CAGCGACTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCTGACTACAAC 3613211 Query 27586 GTCCAAAAGGAATCCACTCT 27605 |||| ||||| || ||||| Sbjct 3613210 ATCCAGAAGGAGTCTACTCT 3613191 Score = 149 bits (164), Expect = 7e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| |||||||| ||||| || || || ||||| ||||| | Sbjct 3612723 ATGCAGATTTTCGTGAAGACCCTTACCGGAAAGACCATCACCCTCGAGGTCGAGTCTTCT 3612664 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 3612663 GACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 3612604 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || |||||||| || ||||| | || ||||| | ||||| || Sbjct 3612603 CAGCGACTTATCTTCGCCGGTAAGCAGCTTGAGGACGGACGAACCCTCTCCGACTACAAC 3612544 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| |||||||||||||| || || || | || || || ||||| || Sbjct 3612543 ATCCAGAAGGAATCCACTCTCCACCTTGTGCTCCGACTCCGAGGTGGCCA 3612494 Score = 129 bits (142), Expect = 7e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||| | || ||||||||||||||||||||||| || ||||||||||| || ||||| || Sbjct 3613540 AAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTCATTTTCGCC 3613481 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 |||||||| |||||||| | || || || | ||||| || |||| ||||| || ||| Sbjct 3613480 GGTAAGCAGCTCGAGGACGGACGAACTCTGTCCGACTACAACATCCAGAAGGAGTCTACT 3613421 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || | || ||||| ||||| Sbjct 3613420 CTCCATCTGGTTCTCCGACTTCGAGGTGG 3613392 >seq3 Length=2943663 Score = 132 bits (146), Expect = 5e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 |||||||| |||||||| ||||||||||| | | ||| |||||||||||||||| Sbjct 1831885 GACGCCAGGTTGCACACCGCCACCTCTTCGGGTGACGAGTACTGGACGATTTCCGTGCAC 1831944 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 | ||| || ||||| || || |||||||| | |||||| ||||| |||||||| |||| Sbjct 1831945 AGATTCGACGACTTGATGGTGCCCAGGTTCTGCTGGTTGGACTTTGCGTTGCAGCTGTCC 1832004 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATC 81087 |||||| |||| |||| ||||| |||| ||| | ||||||| || | | | | Sbjct 1832005 TTGTAGAGCATGAACGGTCCTCCGGTTTCGATCTGACTCGTGAGGATCGCCTTGAACAGC 1832064 Query 81088 TCGCGCGCCTTGA 81100 || |||| |||| Sbjct 1832065 TCCTGCGCGTTGA 1832077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310107715920