Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq6 188 6e-43 seq3 87.8 1e-12 >seq6 Length=2636511 Score = 188 bits (208), Expect = 6e-43 Identities = 342/497 (69%), Gaps = 25/497 (5%) Strand=Plus/Plus Query 29872 CTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTC 29931 |||||| | ||||||| |||| ||| || ||||||||||||| | | |||| || ||| Sbjct 2518929 CTTCAGAGCGTCCACGTGATCCTTGTACACATGAGCGTCTCCCATGGTATGGATAAGCTC 2518988 Query 29932 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29991 ||| || || |||| || || || ||||| || | |||| ||| ||| || Sbjct 2518989 TCCACAGTCCAGATCGGTCACCTGGGCAATCATTCGAGTCAACAGAGCATAGGAGGCAAT 2519048 Query 29992 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 30051 ||| ||||| || || || |||| || | |||| |||||| ||||||||||| ||| Sbjct 2519049 GTTGAAGGGAACACCCAGACCCAGATCACATGACCGCTGGTACAGCTGACACGACAGCCG 2519108 Query 30052 TCCGTCGCTCA----------------CGTAAAACTGACACATGGCGTGGCACGGAGGAA 30095 ||| ||||||| |||| ||||| || | |||||| ||||||| Sbjct 2519109 TCC-TCGCTCAGAGTTCTTGTACGACACGTAGAACTGGCAGAACATGTGGCAGGGAGGAA 2519167 Query 30096 GAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTG 30155 ||||||| | || ||| |||||||||||| ||| ||||| || | ||| | | Sbjct 2519168 GAGCCATTTTGGACAGGTCAGCGGGGTTCCAGGCTGACAGAATGATTCGACGGTCCTGAG 2519227 Query 30156 GGTTGTTCCTGA---TGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 30212 ||||| | ||| || || ||| | |||| ||||||||||| ||| || | || Sbjct 2519228 GGTTGGTTTTGAGAGTGTGGATCAC--CTGTTTG-AGCTGATCCACACCCTGGCCAGTGT 2519284 Query 30213 AGTCTGCCCTCATG-TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACC 30271 | |||| ||| ||| |||| || ||||| ||||| | ||| ||||| || || || Sbjct 2519285 AATCTGTG-TCACAATCCTTGTATTCGGCTCCAAAATGACGCCATTGGAAGCCATATACA 2519343 Query 30272 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 30331 ||||||||||||||||| || || | || || ||| |||| ||| || |||| Sbjct 2519344 GGTCCCAGGTCTCCCTCACGTCTATGTCCCAATCCAGCCTTTTCCAGAAACTCCTTGGAT 2519403 Query 30332 CCGTTGGCGTCCCAGAT 30348 || || ||||||| || Sbjct 2519404 CCATTTCCGTCCCAAAT 2519420 >seq3 Length=2943663 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/186 (73%), Gaps = 10/186 (5%) Strand=Plus/Plus Query 52729 TCGTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 52788 ||||||||||| | || | || ||| | ||| |||| || ||||||||||| ||| Sbjct 394723 TCGTCAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCCTCGC 394782 Query 52789 -TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTT-- 52843 |||||| || ||||| || || | | ||| | ||| | ||||| ||||| || Sbjct 394783 GTCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGACAC--GAGGATATGCCGTTTT 394839 Query 52844 CGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGAT 52903 || | || || | |||||||| |||||||||||||||||||| ||||||| | || Sbjct 394840 CGGCC--GAGGGTATCGTGCCCGATATCATCATCAACCCCCACGCCATTCCCTCGCGTAT 394897 Query 52904 GACCGT 52909 |||||| Sbjct 394898 GACCGT 394903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310196971772