Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016-
03-01] 41 sequences; 21,900,276 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq2 178 3e-39
seq1 174 4e-38
>seq2
Length=4160336
Score = 178 bits (196), Expect = 3e-39
Identities = 173/223 (78%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| |||| || || || || ||||||||||| || |||||||| || || | ||||||
Sbjct 1075043 CGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTT 1074984
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || || || |||||||| || ||||||||||| || || ||||| || |||| |||
Sbjct 1074983 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCC 1074924
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||||||||| || ||||| ||||||||||| || || ||||| ||
Sbjct 1074923 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 1074864
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116
||||| ||||| || || || ||||| ||||| | ||||||||
Sbjct 1074863 GTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1074821
Score = 167 bits (184), Expect = 5e-36
Identities = 169/220 (77%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| |||| ||||||||||| ||||||||||| || |||||||| || || | ||| ||
Sbjct 1736800 CGGAGTCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTT 1736859
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || || || ||||||||||| ||||| || || || || ||||| || |||| ||
Sbjct 1736860 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATGCCC 1736919
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||||||||| || ||||| || |||||||| || || ||||||||
Sbjct 1736920 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGG 1736979
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113
||||| ||||| || || || ||||| ||||| | ||||
Sbjct 1736980 GTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1737019
Score = 96.9 bits (106), Expect = 8e-15
Identities = 196/290 (68%), Gaps = 6/290 (2%)
Strand=Plus/Minus
Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149
||||||||||||| ||||| |||| ||| || ||||| |||||||| | ||
Sbjct 4111163 GTTCTTTTGGTTGGACTTTCGGTTGCA---GGCGTCCTTGTAGAGCATGAAGGGGTTACC 4111107
Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209
||| | || | |||||||| | ||| |||| |||||| ||| || |
Sbjct 4111106 GGACTCGGTCTGGCAGTCCAGAATGTGGTACCACAGCTTCTGGGCAGGGATGGTTCGTCG 4111047
Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269
|| || || |||||||||| | ||| |||| || ||| || || ||||| ||
Sbjct 4111046 ACCTCGGCCCTCCTTCTCGTACTGCTCGTACAGCTGCTTGAACTCGTCACCGTAGACGTC 4110987
Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329
|||||| || || ||| |||||||| | |||| |||||| ||| | || |||||
Sbjct 4110986 ATCGAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCACTCGGCGTTCTGCTCGACTCG 4110927
Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGCTC 178379
| |||||| ||||| | | |||||| || ||| | |||| |||||
Sbjct 4110926 CTCCATGAACAGGTCGGGGATCCAGAGAGCCAGGAACAGATCTCGGGCTC 4110877
>seq1
Length=4858313
Score = 174 bits (192), Expect = 4e-38
Identities = 171/221 (77%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| |||| || |||||||| |||||||| || || |||||||| || || | |||||
Sbjct 3612503 CGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTT 3612562
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||| || || |||||||| || ||||||||||| || || ||||| || || | ||
Sbjct 3612563 CGTCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATACCC 3612622
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||||||||| || ||||| ||||| |||||||| || ||||||||
Sbjct 3612623 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCGACCTCGAGG 3612682
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| |||||||| || || ||||| || || | ||||||
Sbjct 3612683 GTGATGGTCTTTCCGGTAAGGGTCTTCACGAAAATCTGCAT 3612723
Score = 168 bits (186), Expect = 2e-36
Identities = 170/221 (77%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| |||| ||||| || || ||||| ||||| || |||||||| || || | || ||
Sbjct 3612731 CGGAGTCGGAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTT 3612790
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||| || || |||||||| || ||||||||||| || || ||||| || |||| ||
Sbjct 3612791 CGTCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATACCC 3612850
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||| ||||| || ||||| || ||||| || ||| |||||||||||
Sbjct 3612851 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAGGACTCAACCTCGAGG 3612910
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| |||||||| || || ||||| ||||| | ||||||
Sbjct 3612911 GTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 3612951
Score = 163 bits (180), Expect = 7e-35
Identities = 156/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210915 AGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTG 210974
||||| ||||| || |||||||| || || | ||||| | ||||| || ||||||||
Sbjct 3613191 AGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTA 3613250
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| ||||| || || || || ||||| || |||| || |||||||||||||||||
Sbjct 3613251 CCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGAC 3613310
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| ||||| || ||||| || ||| ||||||||||||||||| |||||||| |||||
Sbjct 3613311 TTGACGTTGTCAATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCAGTGAGG 3613370
Query 211095 GTCTTTACAAACACCTGCAT 211114
||||| || || | ||||||
Sbjct 3613371 GTCTTCACGAAAATCTGCAT 3613390
Score = 122 bits (134), Expect = 2e-22
Identities = 126/165 (76%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||||| || || || || ||||| ||||| || |||||||| || || | || ||
Sbjct 3613398 CGAAGTCGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTT 3613457
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||| || || |||||||| || ||||| || || || || ||||| || |||| |||
Sbjct 3613458 CGTCCGTCCTCGAGCTGCTTACCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATTCCC 3613517
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058
||||||||||| ||||| || ||||| ||||||||||| |||
Sbjct 3613518 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAG 3613562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151391082965
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |