Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2 178 3e-39 seq1 174 4e-38 >seq2 Length=4160336 Score = 178 bits (196), Expect = 3e-39 Identities = 173/223 (78%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| || || || || ||||||||||| || |||||||| || || | |||||| Sbjct 1075043 CGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTT 1074984 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || |||||||| || ||||||||||| || || ||||| || |||| ||| Sbjct 1074983 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCC 1074924 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||||||||| || || ||||| || Sbjct 1074923 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 1074864 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116 ||||| ||||| || || || ||||| ||||| | |||||||| Sbjct 1074863 GTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1074821 Score = 167 bits (184), Expect = 5e-36 Identities = 169/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| ||||||||||| ||||||||||| || |||||||| || || | ||| || Sbjct 1736800 CGGAGTCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTT 1736859 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || ||||||||||| ||||| || || || || ||||| || |||| || Sbjct 1736860 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATGCCC 1736919 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| || |||||||| || || |||||||| Sbjct 1736920 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGG 1736979 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113 ||||| ||||| || || || ||||| ||||| | |||| Sbjct 1736980 GTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1737019 Score = 96.9 bits (106), Expect = 8e-15 Identities = 196/290 (68%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 ||||||||||||| ||||| |||| ||| || ||||| |||||||| | || Sbjct 4111163 GTTCTTTTGGTTGGACTTTCGGTTGCA---GGCGTCCTTGTAGAGCATGAAGGGGTTACC 4111107 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||| | || | |||||||| | ||| |||| |||||| ||| || | Sbjct 4111106 GGACTCGGTCTGGCAGTCCAGAATGTGGTACCACAGCTTCTGGGCAGGGATGGTTCGTCG 4111047 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 || || || |||||||||| | ||| |||| || ||| || || ||||| || Sbjct 4111046 ACCTCGGCCCTCCTTCTCGTACTGCTCGTACAGCTGCTTGAACTCGTCACCGTAGACGTC 4110987 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329 |||||| || || ||| |||||||| | |||| |||||| ||| | || ||||| Sbjct 4110986 ATCGAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCACTCGGCGTTCTGCTCGACTCG 4110927 Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGCTC 178379 | |||||| ||||| | | |||||| || ||| | |||| ||||| Sbjct 4110926 CTCCATGAACAGGTCGGGGATCCAGAGAGCCAGGAACAGATCTCGGGCTC 4110877 >seq1 Length=4858313 Score = 174 bits (192), Expect = 4e-38 Identities = 171/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| || |||||||| |||||||| || || |||||||| || || | ||||| Sbjct 3612503 CGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTT 3612562 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| || || |||||||| || ||||||||||| || || ||||| || || | || Sbjct 3612563 CGTCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATACCC 3612622 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||| |||||||| || |||||||| Sbjct 3612623 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCGACCTCGAGG 3612682 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || || ||||| || || | |||||| Sbjct 3612683 GTGATGGTCTTTCCGGTAAGGGTCTTCACGAAAATCTGCAT 3612723 Score = 168 bits (186), Expect = 2e-36 Identities = 170/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| ||||| || || ||||| ||||| || |||||||| || || | || || Sbjct 3612731 CGGAGTCGGAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTT 3612790 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| || || |||||||| || ||||||||||| || || ||||| || |||| || Sbjct 3612791 CGTCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATACCC 3612850 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || ||||| || ||||| || ||| ||||||||||| Sbjct 3612851 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAGGACTCAACCTCGAGG 3612910 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || || ||||| ||||| | |||||| Sbjct 3612911 GTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 3612951 Score = 163 bits (180), Expect = 7e-35 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210915 AGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTG 210974 ||||| ||||| || |||||||| || || | ||||| | ||||| || |||||||| Sbjct 3613191 AGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTA 3613250 Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || ||||| || || || || ||||| || |||| || ||||||||||||||||| Sbjct 3613251 CCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGAC 3613310 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| || ||||| || ||| ||||||||||||||||| |||||||| ||||| Sbjct 3613311 TTGACGTTGTCAATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCAGTGAGG 3613370 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 3613371 GTCTTCACGAAAATCTGCAT 3613390 Score = 122 bits (134), Expect = 2e-22 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || || || || ||||| ||||| || |||||||| || || | || || Sbjct 3613398 CGAAGTCGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTT 3613457 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| || || |||||||| || ||||| || || || || ||||| || |||| ||| Sbjct 3613458 CGTCCGTCCTCGAGCTGCTTACCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATTCCC 3613517 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 ||||||||||| ||||| || ||||| ||||||||||| ||| Sbjct 3613518 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAG 3613562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151391082965