Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq5 167 2e-36 >seq5 Length=2767003 Score = 167 bits (184), Expect = 2e-36 Identities = 565/872 (65%), Gaps = 15/872 (2%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || ||||| ||||| || ||||| |||||||| || || ||||| | | ||| || || Sbjct 1872734 TTCTGGTAGTCGGACACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTTC 1872675 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTT---AGAGCTACA 4373 ||||| || || || || || || | |||||| || | || ||||| || Sbjct 1872674 TCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGG---AGTTGCCGAGAGCAACC 1872618 Query 4374 AGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATT 4433 |||| ||||| || ||||| || || ||||||| |||||| | | ||| ||||| | Sbjct 1872617 AGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATTCCGAGC 1872558 Query 4434 AATCTCACAGGT-AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGAT 4492 | || | |||| || |||| |||| ||||| || || ||| ||||| || || Sbjct 1872557 AGTC-CGCAGGGCAGAGCGTCGGTCAGGAACTCCTGCTCGATACCAACGGCCTCGACAAT 1872499 Query 4493 TATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGC 4552 | || | | | | || || ||| || | | || || | | ||| || Sbjct 1872498 CACGTCCTCGACAATCTTCTTGGAGGGTCGGTTCTCGAGGTGCGAGAAGAGCAGACAGGC 1872439 Query 4553 AAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGG 4612 ||| || |||| ||| ||||||| | || || ||||| || || || | ||||| Sbjct 1872438 AAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGG 1872379 Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672 ||| | ||||| ||| || ||||| || || | ||| || || || || ||||| ||||| Sbjct 1872378 CATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAAGATGCC 1872319 Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT--TTGTCTTTAATC 4730 || ||||||||||| || | | | | | | | || | | | || | ||| ||| Sbjct 1872318 CTCGACGGCGGCAAAGGCGA-TCAGCCGCTCGCCAAAG-GTCGACTCGTCGTCGGAGATC 1872261 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAAT 4790 || || | ||||||| || || ||||| | ||| || || || | || ||||| || Sbjct 1872260 CACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAAC 1872201 Query 4791 AATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCA 4850 | | || || ||||| | || || ||||| || || || ||| |||| Sbjct 1872200 AGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACGTTTCC 1872141 Query 4851 GAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGA 4910 || || || || || || ||||| || ||||| ||||| | || || | || || Sbjct 1872140 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGACCTGC 1872081 Query 4911 ACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAA 4970 || ||| | |||| || || | ||| ||||| || ||||| || || ||||| Sbjct 1872080 ACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTCACAATACCATCGGAAGCAGCAAAG 1872021 Query 4971 AACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA---GTTTTTTCCAGTGG 5027 || |||| || || || || ||| || | ||||| || | | || | ||||| | Sbjct 1872020 AAGGCCAGCACGTGCGAGATGAAGAACCGCTCGTCGTTGTTGAGCCGGTTCTCCCAGTCG 1871961 Query 5028 GGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTG 5087 || || || | ||||| || || | ||||| || || || || || || ||| Sbjct 1871960 CCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTG 1871901 Query 5088 TACATAGACCAAATATCAGGATACTGAATCGG 5119 ||||| ||| || || | ||||| || || Sbjct 1871900 TACATCTGCCAGATCTCGTGGTACTGGATGGG 1871869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049386608653