Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq6 194 1e-44 seq3 93.3 3e-14 >seq6 Length=2636511 Score = 194 bits (214), Expect = 1e-44 Identities = 408/605 (67%), Gaps = 25/605 (4%) Strand=Plus/Plus Query 27138 CTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTC 27197 |||||| | |||||||||||| ||| || ||||||||||||| ||| |||| || ||| Sbjct 2518929 CTTCAGAGCGTCCACGTGATCCTTGTACACATGAGCGTCTCCCATGGTATGGATAAGCTC 2518988 Query 27198 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 27257 ||| || || |||| || || || ||||| || | |||| ||| ||| || Sbjct 2518989 TCCACAGTCCAGATCGGTCACCTGGGCAATCATTCGAGTCAACAGAGCATAGGAGGCAAT 2519048 Query 27258 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 27317 ||| ||||| || || || |||| || | |||| |||||| ||||||||||| ||| Sbjct 2519049 GTTGAAGGGAACACCCAGACCCAGATCACATGACCGCTGGTACAGCTGACACGACAGCCG 2519108 Query 27318 TCCATCGCTTA----------------CGTAAAACTGACATATGGCGTGGCACGGAGGAA 27361 ||| ||||| | |||| ||||| || | |||||| ||||||| Sbjct 2519109 TCC-TCGCTCAGAGTTCTTGTACGACACGTAGAACTGGCAGAACATGTGGCAGGGAGGAA 2519167 Query 27362 GAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTG 27421 ||||||| | || ||| |||||||||||| ||| ||||| || | ||| | | Sbjct 2519168 GAGCCATTTTGGACAGGTCAGCGGGGTTCCAGGCTGACAGAATGATTCGACGGTCCTGAG 2519227 Query 27422 GGTTGTTCCTGA---TGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 27478 ||||| | ||| || || ||| | |||| ||||||||||| ||| || | || Sbjct 2519228 GGTTGGTTTTGAGAGTGTGGATCAC--CTGTTTG-AGCTGATCCACACCCTGGCCAGTGT 2519284 Query 27479 AGTCTACCCTCATG-TCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACC 27537 | ||| ||| ||| |||| || ||||| ||||| | ||||||||| || || || Sbjct 2519285 AATCTGTG-TCACAATCCTTGTATTCGGCTCCAAAATGACGCCATTGGAAGCCATATACA 2519343 Query 27538 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 27597 ||||||||||||||||| || || | || || ||| |||| ||| || |||| Sbjct 2519344 GGTCCCAGGTCTCCCTCACGTCTATGTCCCAATCCAGCCTTTTCCAGAAACTCCTTGGAT 2519403 Query 27598 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCT 27657 || || ||||||| || | | || ||| |||| ||| || || | || Sbjct 2519404 CCATTTCCGTCCCAAATATGAATGTTTTTTTCGCTCAGCTTCTTGCCGTCGGTACATCCG 2519463 Query 27658 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGG 27717 || ||||| || || ||||||| ||| | ||||||||| ||| || || | Sbjct 2519464 GCCACAAACCAGAGAAGTTCCTCCAAAACGCCTCGGTAAAAGACCCGCTTTGTGGTCAAC 2519523 Query 27718 AGGGG 27722 ||||| Sbjct 2519524 AGGGG 2519528 >seq3 Length=2943663 Score = 93.3 bits (102), Expect = 3e-14 Identities = 136/186 (73%), Gaps = 10/186 (5%) Strand=Plus/Plus Query 48509 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-C 48567 ||||||||||| | || | ||| ||| | ||| |||| || ||||||||||| || | Sbjct 394723 TCGTCAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCCTCGC 394782 Query 48568 TTCACGGCGCAAAAGGGGACATGTGGAGC--CGTCCTGACCCAGGAGGACATGCCCTT-- 48623 |||||| || ||||| || ||| | ||| | ||| | ||||| ||||| || Sbjct 394783 GTCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGACAC--GAGGATATGCCGTTTT 394839 Query 48624 CGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGAT 48683 || | || || | |||||||| |||||||||||||||||||| ||||||| | || Sbjct 394840 CGGCC--GAGGGTATCGTGCCCGATATCATCATCAACCCCCACGCCATTCCCTCGCGTAT 394897 Query 48684 GACCGT 48689 |||||| Sbjct 394898 GACCGT 394903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507015361871