Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 138 2e-27 >seq5 Length=2767003 Score = 138 bits (152), Expect = 2e-27 Identities = 384/588 (65%), Gaps = 6/588 (1%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||| || || ||||| || |||| || | ||||| || || ||||| Sbjct 1872444 ACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAG 1872385 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 |||||||| || || || || |||||||| || || | ||||| || || || ||||| Sbjct 1872384 GCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAA 1872325 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-- 48317 ||||| || ||||| ||||| ||| | || | ||| || | | | |||| || Sbjct 1872324 GATGCCCTCGACGGCGGCAAAGGCGATCAGCCGCTCGCCAAAGGTCGACTCGTCGTCGGA 1872265 Query 48318 -ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 |||||| | ||||| || ||||||||||| | || || || || || || || || Sbjct 1872264 GATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTT 1872205 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 || || || || || ||| || || | ||| || || || | || ||| | Sbjct 1872204 GAACAGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACGT 1872145 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 ||| ||||| || || || || ||||| || ||||| || || | || || | || Sbjct 1872144 TTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGAC 1872085 Query 48497 CTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 ||| ||||| | ||||| || ||| ||||| || || || ||||| |||||| Sbjct 1872084 CTGCACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTCACAATACCATCGGAAGCAGC 1872025 Query 48557 AAAAAATGCTAATACATGTTTAATAAAATA---TTTTTCGTTGGAAGTCAGTTTATTCCA 48613 ||| || || | || || || || | | |||||| | | || | ||| Sbjct 1872024 AAAGAAGGCCAGCACGTGCGAGATGAAGAACCGCTCGTCGTTGTTGAGCCGGTTCTCCCA 1871965 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 ||| || || || | ||| | || || || ||||| || || ||||| || || Sbjct 1871964 GTCGCCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTT 1871905 Query 48674 TTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || ||||| | ||| || || ||| ||||| ||||| | ||||| Sbjct 1871904 CTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAA 1871857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668443982240