Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 125 2e-23 seq2 123 6e-23 >seq1 Length=4858313 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| ||||| ||||||||||| || ||||||||||| |||| | ||||| Sbjct 3612733 GAGTCGGAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCG 3612792 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || || ||||||||||| | ||||||||||| | || || || Sbjct 3612793 TCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATACCCTC 3612852 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || ||||| | || | | | || || ||| || || || || Sbjct 3612853 CTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAGGACTCAACCTCGAGGGT 3612912 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || ||||| || |||| |||||| Sbjct 3612913 GATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 3612951 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| ||||| || ||||| || || || ||||||||||| |||| | |||| Sbjct 3612505 GAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCG 3612564 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||||||||| | ||||||||||| | ||| || || Sbjct 3612565 TCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTC 3612624 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | |||| ||| ||| || || || || Sbjct 3612625 CTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCGACCTCGAGGGT 3612684 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || ||||||||||| | |||||| Sbjct 3612685 GATGGTCTTTCCGGTAAGGGTCTTCACGAAAATCTGCAT 3612723 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151905 AGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTC 151964 ||||||||||| || ||||||||||| || | | |||| ||||| || || || Sbjct 3613191 AGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTA 3613250 Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || ||||| || || | ||||||||||| | || || ||||| || || || || Sbjct 3613251 CCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGAC 3613310 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||||| | || | | | || || ||| || || ||||| || || || || ||||| Sbjct 3613311 TTGACGTTGTCAATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCAGTGAGG 3613370 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||||||||| | |||||| Sbjct 3613371 GTCTTCACGAAAATCTGCAT 3613390 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| || ||||| ||||||||||| || ||||||||||| |||| | ||||| Sbjct 3613401 AGTCGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGT 3613460 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || || || |||||||| || || | ||||||||||| | ||||| ||| Sbjct 3613461 CCGTCCTCGAGCTGCTTACCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 3613520 Query 152007 TTTTCTTGAATTTT 152020 || || ||||| || Sbjct 3613521 TTGTCCTGAATCTT 3613534 >seq2 Length=4160336 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| || || ||||| ||||| ||||| || ||||||||||| || | | |||| Sbjct 1075041 GAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCG 1074982 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||||||||| | ||||||||||| | ||||| || Sbjct 1074981 GCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTC 1074922 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| ||| ||| || ||||| || Sbjct 1074921 CTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 1074862 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106 ||||| || || || || ||||| || || | |||||||| Sbjct 1074861 GATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1074821 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||||| || ||||| ||||| || ||||||||||| || | | ||||| Sbjct 1736802 GAGTCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCG 1736861 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||| || || | ||||||||||| | || || || Sbjct 1736862 GCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATGCCCTC 1736921 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| ||| ||| || || || || Sbjct 1736922 CTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGT 1736981 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103 || || ||||| || || ||||| || |||| |||| Sbjct 1736982 GATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1737019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820193883511