Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2 163 6e-35 seq1 158 3e-33 seq5 111 3e-19 >seq2 Length=4160336 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || ||||| | ||| || || |||||||||||||||| Sbjct 1075050 ACCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1074991 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || || || ||||| ||||| | || || ||||| || Sbjct 1074990 AAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1074931 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 1074930 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1074871 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 || || ||||| |||||||| || | ||||| || || |||||||||| Sbjct 1074870 CTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1074821 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || || || || || | ||| || || |||||||||||||||| Sbjct 1736793 ACCTCCTCGGAGTCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1736852 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || || || ||||| || |||| || || ||||| || Sbjct 1736853 AAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGG 1736912 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | || || ||||| |||| || || Sbjct 1736913 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 1736972 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 ||||| ||||| ||||| || || | ||||| || || || |||| Sbjct 1736973 CTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1737019 >seq1 Length=4858313 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || || || || || | ||| ||| || |||||||||||||| | Sbjct 3612497 CCACCTCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAG 3612556 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| || || || ||||| ||||| | || || ||||| || Sbjct 3612557 AGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 3612616 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| | || ||| | ||||||||||| |||| ||||| Sbjct 3612617 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCGACC 3612676 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 3612677 TCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTCACGAAAATCTGCAT 3612723 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || |||||||| | || || || |||||||||||||| | Sbjct 3612724 ACCACCTCGGAGTCGGAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 3612783 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || || || ||||| | || || ||||| || Sbjct 3612784 CAGAGTTCGTCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCCGGGGG 3612843 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || ||| | || || || || || | || || Sbjct 3612844 AATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAGGACTCAAC 3612903 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || |||| ||||| || || |||||||| Sbjct 3612904 CTCGAGGGTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 3612951 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||||| || || ||||||||||| || || || || || || Sbjct 3613200 TCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAA 3613259 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || ||||| ||||| ||||||||||| |||||||| | || ||| | Sbjct 3613260 ATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 3613319 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || || || || | || || ||||||||||| ||||| || || | ||||| ||| Sbjct 3613320 TCAATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACG 3613379 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 3613380 AAAATCTGCAT 3613390 Score = 116 bits (128), Expect = 8e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 317020 TCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTG 317079 |||| || ||||| || || | ||| ||||| |||| || | |||||| || ||||| Sbjct 2148617 TCCTGGGTGGGGAAACCCTCGACCTGGCCGTTGGCAATGGCTCGCATCAGGGTGGACTTA 2148558 Query 317080 CCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTG 317139 |||||||| |||||||| || ||||| || || || ||| || || |||| Sbjct 2148557 CCAGCACCGTTGGGGCCACAGAGACCGTATCGTCGGCCTCGCTTGAGTCGAAGCTGGGTT 2148498 Query 317140 TTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCG 317199 |||||| |||||||| |||| || ||||||||||||||||| | |||||| ||||| Sbjct 2148497 CGGTTCAGCAGAATCTTGGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCT 2148438 Query 317200 CC 317201 || Sbjct 2148437 CC 2148436 Score = 100 bits (110), Expect = 6e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || |||||||| | || || || |||||||||||||| | Sbjct 3613391 ACCACCTCGAAGTCGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 3613450 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || ||||| || || | || || ||||| || Sbjct 3613451 CAGAGTTCGTCCGTCCTCGAGCTGCTTACCGGCGAAAATGAGTCGCTGCTGGTCCGGGGG 3613510 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| | || ||| | ||||| ||||| || | ||||| Sbjct 3613511 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGAC 3613570 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 315708 GAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTG 315767 |||| ||||| |||| | ||||||| ||||||||||||||||| | |||||| | || Sbjct 2149957 GAGAGTCTCGA--TCCAGATAGTTGGTAGGCTCATCAAGAACGATCAGATGGGGTCGCTG 2149900 Query 315768 CCATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCG 315827 ||| | |||| | | || ||||| | || || ||||||||||| || ||||| || Sbjct 2149899 CCAGGTACAGGCGGCAAGCACCAGCTTGACCTTCTGTCCACCAGACAGACCTCGGATTCG 2149840 Query 315828 AGAATGAGTGGTAAATTCTGGGTCAAGGCCAA 315859 || |||| | || || || || || |||| Sbjct 2149839 GGAGTGAGAGACAAGCTCGGGCTCGAGACCAA 2149808 >seq5 Length=2767003 Score = 111 bits (122), Expect = 3e-19 Identities = 566/889 (64%), Gaps = 34/889 (4%) Strand=Plus/Plus Query 229535 CTTCCCTATTCAATACCCCGACCTCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTG 229594 |||||| || || |||| ||| ||||| | ||||| |||||||| | ||| | || || Sbjct 1871865 CTTCCCCATCCAGTACCACGAGATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTG 1871924 Query 229595 GACCACGGAGGAAGTCCCCCTAAATGCA--GACGTCGTCGACTGGCGCGAGAAAC---TC 229649 |||| | ||||| | || ||| ||| | | ||||||| ||||| | || Sbjct 1871925 GACCGCCGAGGAGATTGATCTCG--GCAAGGACATGGGCGACTGG---GAGAACCGGCTC 1871979 Query 229650 AACGACGATGAACGCCATTTCATCAAGCACATTCTCGGGTTTTTTGCAGGTTCCGACGGT 229709 ||| |||| || || |||||| |||| | || | || ||||| | |||||| ||| Sbjct 1871980 AACAACGACGAGCGGTTCTTCATCTCGCACGTGCTGGCCTTCTTTGCTGCTTCCGATGGT 1872039 Query 229710 ATCGTGATGGAAAACTTGCAGACTAACTTCAGCGTCGAAGTAACGGTCCCAGAGGCACGG 229769 || |||| || ||| || | ||| || ||| || |||||| ||||| | Sbjct 1872040 ATTGTGAACGAGAACCTGGTGGAGCGATTCTCCGGCGAGGTGCAGGTCCCCGAGGCCAAG 1872099 Query 229770 CAGTTTTACGCATACCAGACGTTCAATGAATCTGTTCATTCGGAACAGTATGCCCTTCTT 229829 || |||| | ||||| | | || | || |||||| ||| | || || Sbjct 1872100 TGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAAACGTACTCGCTGCTG 1872159 Query 229830 ATTGACGCGCTCATTTCCGACGAGCGAGAGCGTGCCGAACTGTTCGACGCCATCGAAAAC 229889 || ||| | ||| ||| ||||| || | |||||| |||||||||| | | Sbjct 1872160 ATCGACACATACATCAAGGACCCCAAGGAGCGAACCTACCTGTTCAACGCCATCGAGACC 1872219 Query 229890 ATCCCGGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGTGG--CTGGAAC--CCAGTAA 229945 ||||| || | || || || ||||| | |||||| || || | ||| Sbjct 1872220 ATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAAGTGGATCTCCGACGACGAGTCG 1872279 Query 229946 ATCGTTTGCAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTATTCTGTTCTCCGGGAG 230005 | | || || ||||| || |||| | | ||| ||||| || | |||||||| Sbjct 1872280 ACCTTTGGC-GAGCGGCTGATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTC 1872338 Query 230006 TTTCTGCGCCATCTTTTGGCT-ACGCAACAAGGGCGTCATGCCCGGGCTCGGTCTGTCGA 230064 ||| | ||||||| ||||| | | | | ||| | |||||||||| ||| | || | Sbjct 1872339 GTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCCGGCCTCACCTTCTCCA 1872397 Query 230065 ACGAATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGGTCTTGTATTC-- 230122 |||| ||||| | | ||||| ||||| ||| | |||| | |||| | ||| Sbjct 1872398 ACGAGCTCATCTCCCGAGACGAGGGTCTGCACACCGACTTTGCCT--GTCTGCTCTTCTC 1872455 Query 230123 GAAGCTAAATAACAAACTACCTTTCGAAACGGT------GAAACAAATCGTCACAGAAGT 230176 | | || | ||| | ||| | | | | | | | | || ||| || | Sbjct 1872456 GCACCTCGAGAAC---CGACCCTCCAAGAAGATTGTCGAGGACGTGATTGTC---GAGGC 1872509 Query 230177 AGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAA 230236 |||| | || |||||||| | ||||||| | || ||| | || |||| ||||| Sbjct 1872510 CGTTGGTATCGAGCAGGAGTTCCTGACCGACGCTCTGCCCTGCGGACTGCTCGGAATGAA 1872569 Query 230237 TGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGG 230296 || | |||||| | || || || || || || || || ||| | | || || || || Sbjct 1872570 CGCCAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTTGCTCTCGG 1872629 Query 230297 GTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCA 230356 || || || || ||||||| |||||||||| || |||||| ||| || || Sbjct 1872630 CAACTCCAAGGTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGC 1872689 Query 230357 GGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 || || || ||||||||||| ||||| || ||| || || |||||| Sbjct 1872690 CGGCAAGACCAACTTCTTCGAGAAGCGGGTGTCCGACTACCAGAAGGCC 1872738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738650134814