Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3 136 8e-27 seq1 120 6e-22 >seq3 Length=2682169 Score = 136 bits (150), Expect = 8e-27 Identities = 217/309 (70%), Gaps = 7/309 (2%) Strand=Plus/Minus Query 319363 TCGGTAAGGGCGTAGTAA--CTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGAT 319420 ||||| |||| ||||||| || || ||||| ||| ||| || || |||| ||| | Sbjct 2005894 TCGGTCAGGGTGTAGTAAGCCTTGCCC--TCGGGTCGCACCTTGACAAAGTCGGCCAGGT 2005837 Query 319421 TTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAG 319480 | |||||||| | |||||| ||| ||||| || ||| |||||| || | Sbjct 2005836 TGCCCTTGTAGTAGACCAGCTTCTTGTTC---TCGTAGTGCGCAATGTCGGTGCACACGG 2005780 Query 319481 CGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCA 319540 |||||||||| |||||||||||||| ||||||| | | | |||| | || | || Sbjct 2005779 CGTCGAGGAAGCCGGAGTCGTGTGAAACAATCAGCGAGGTGATGTCCGTGTGGGCCACCA 2005720 Query 319541 GGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAA 319600 |||| || || |||| | ||||| ||| |||||||| || |||||||| || | Sbjct 2005719 GGTAGTCCTGCAGCCACTTGACGTTGCCCACGTCCAGATGGTTAGTAGGCTCGTCCAGCA 2005660 Query 319601 GCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTC 319660 |||| | | || |||| |||||| || || || || | || ||||| ||||| |||| Sbjct 2005659 GCAGAATGTCGGCCTTCATGAGCATGGCTCGGGCCAGCTCCAGCTTCATCTTCCATCCTC 2005600 Query 319661 CGGAAAGAG 319669 | || |||| Sbjct 2005599 CAGACAGAG 2005591 Score = 113 bits (124), Expect = 1e-19 Identities = 268/404 (66%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296 ||||||| ||||| ||| |||| | ||||| ||||| | || |||||| ||| Sbjct 1915236 CCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCA 1915177 Query 230297 TCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGA 230356 || || ||||||||||| || | || | | || ||| || | ||| ||| Sbjct 1915176 TCTCCCGAGACGAGGGTCTGCACACGGACTTTGCCTGTCTGCTGTTCTCGCACCTCGAGA 1915117 Query 230357 ACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAA 230413 || || | | | ||| | ||| | | | ||| || || |||| | ||| Sbjct 1915116 ACCGGC---CCTCCAAGAAGATTGTCGAGGACGTGATTGTCGAGGCCGTTGGCATCGAGC 1915060 Query 230414 AGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGG 230473 |||||||| | ||||| | || || | || | ||||||||||| | || ||| Sbjct 1915059 AGGAGTTCCTGACCGACGCGCTCCCCTGCGGTCTGCTGGGCATGAACGCCAAGCTCATGT 1915000 Query 230474 GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGT 230533 | |||||||| || || || |||||||| | | || || || || || || || | Sbjct 1914999 GCCAGTACATTGAGTTTGTGGCCGACCGGCTGCTGGTGGCCCTCGGAAACTCCAAGGTCT 1914940 Query 230534 ACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACT 230593 ||||||| | |||||||| | || |||||| ||| ||||| || |||||||||| Sbjct 1914939 ACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGCAAGACCAACT 1914880 Query 230594 TCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||||| ||||| || ||||| |||| | | ||||| ||| Sbjct 1914879 TCTTCGAGAAGCGGGTGTCCGACTACCAGAAGGCCGGTGTCATG 1914836 >seq1 Length=4810746 Score = 120 bits (132), Expect = 6e-22 Identities = 133/175 (76%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || || | ||||||||| |||| || ||||||||||| || ||||| || || Sbjct 2137207 GGGGAAACCCTCGACCTGGCCGTTGGCAATGGCTCGCATCAGGGTGGACTTACCAGCACC 2137148 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAA-CCGCGTGTTGTTCA 319975 ||| || ||||| |||||||| || || || || | || ||| | | || ||||| Sbjct 2137147 GTTGGGGCCACAGAGACCGTATCGTCGGCCTCGCTT-AAGTCGAAGCTGGGTTCGGTTCA 2137089 Query 319976 GAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 | ||||| || |||| || |||||||| || ||||| | |||||||||||| || Sbjct 2137088 GCAGAATCTTGGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCTCC 2137034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823471418570