Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 179 4e-40 seq3 165 1e-35 seq5 96.9 4e-15 >seq2 Length=2949780 Score = 179 bits (198), Expect = 4e-40 Identities = 468/711 (66%), Gaps = 2/711 (0%) Strand=Plus/Plus Query 53954 AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCAC 54013 |||||||| || | || | || | || ||||| || | || ||||| | | |||| Sbjct 79994 AACTCGTCGCCGTAGACGTCATCAAGGCCGGGACACTCGTTGGGGCACATGAGGGTCCAC 80053 Query 54014 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 54073 || ||| | || ||||| | ||| || || || || ||||| ||||| | || ||| Sbjct 80054 TCGGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCAGAGAGCCAGGAACAGA 80113 Query 54074 TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 54133 |||| || || | ||||| || || |||||| || ||| |||| | | | Sbjct 80114 TCTCGGGCTCGAATCTCCTCCTTACCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGACG 80173 Query 54134 TCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGA 54193 || ||||| || |||| ||| |||| | |||| || || ||||| || ||||| Sbjct 80174 TCGTCGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCGCCCTGG 80233 Query 54194 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCA 54253 || | ||||| ||||||||| || || |||| || ||| || | ||||| ||||| | Sbjct 80234 TCGACGTATCGAGCGGTGTTGTTGTACACTCGCAGCATGGGCACGATACCGTTGGAGGTT 80293 Query 54254 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATC 54313 || ||||| || | ||| ||| || | || || || || || || ||||| || Sbjct 80294 CCGTTGGTTCCAGCGATGTAGGAGCCGGTAGCTCGGATGTTGTGGATGGACAGACCAATG 80353 Query 54314 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 54373 || || || || || || | || || || | || || |||||||| || || Sbjct 80354 CCTCCAGCGGACTTGGAAATGAGAGCACAAGTCTTGAGAGTGTCGTAGATGCCGTCGATG 80413 Query 54374 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 54433 || ||| ||||||| | || ||||| ||||| ||| | | || || || Sbjct 80414 GAGTCGTCCTTCATGTTGACGAGGAAACACGACGACATCTGGGGCTGGGGGGTGCCTGCG 80473 Query 54434 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATTGTACGTCTC 54492 || | | ||| |||||||| || || || | || | ||| | |||| ||||| ||||| Sbjct 80474 TTGTACAGGGTGGGAGAAGCATGGGTGAAGTACTTCTGAGACATGTAG-TTGTAGGTCTC 80532 Query 54493 GATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 54552 ||||||| | | || || || || || || | || ||||| | ||| ||||| Sbjct 80533 GATAGCTCGGGCAATGTCGTCGCCGTGGATACCGACAGACACTCGCATGATCATCTGCTG 80592 Query 54553 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAA 54612 |||||| ||| | | ||| | | ||||| ||| | | |||| ||| || || Sbjct 80593 AGGTCTCTCAGCAACGGCACCGTTGACTCGCAGCAGGTATGCTCGCTCCAGAGTCTTGAA 80652 Query 54613 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 ||||| |||||||| | ||||||| ||||| | ||| || |||||| Sbjct 80653 GCCAAAGTAGTTGTAGGTGAAGTCTCTGTCGTAGAGAATGGCTCCGTTGAG 80703 >seq3 Length=2682169 Score = 165 bits (182), Expect = 1e-35 Identities = 396/597 (66%), Gaps = 8/597 (1%) Strand=Plus/Plus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| || ||| || || || ||| ||||||||||||| || | |||||||| Sbjct 1915131 AACAGCAGACAGGCAAAGTCCGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAG 1915190 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || || |||||||| || || ||||| || ||||| || ||||| ||||| || || Sbjct 1915191 AAGGTCAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCG 1915250 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CG 24302 || || || || || || || || ||||||||||| |||| || ||| | || || Sbjct 1915251 GAGAAAAAGATGCCCTCCACGGCGGCAAAGGCAATGAGTCGCTCGCCAAAGGTGGACTCG 1915310 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 ||| |||||||| | ||||| ||||||||||| || | || || || ||||| Sbjct 1915311 TCGTCGGAGATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCG 1915370 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 || || || || || ||| || || || || || | ||||| || |||| || Sbjct 1915371 ATGGCGTTGAACAGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGC 1915430 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 || ||||||| || ||||| || || || || || |||||||| || | ||| Sbjct 1915431 GAGTAGGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCC 1915490 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 |||| ||| || || |||| || || | | || || || || || ||||| Sbjct 1915491 TCGGGGGCCTGCACCTCGCCGGAAAACCGCTCCACCAGGTTCTCGTTGACGATGCCGTCC 1915550 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AG 24598 ||| ||||| || |||| || || || || | ||||| | |||| | Sbjct 1915551 GAGGCGGCAAAGAAGGCCAGCACGTGGGAGATGAAGAACCGCTCGTC-GTTGTTGAGCCG 1915609 Query 24599 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 24658 || | ||| || || || || | ||| | ||| || | ||||| || || || Sbjct 1915610 GTTCTCCCAGTCGCCCATGTCCTTGCCGAGATCGATTTCCTCGGCCGTCCAGAACGACGC 1915669 Query 24659 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 ||| ||||| || ||||| | |||||| || || || || || || || | ||||| Sbjct 1915670 CTCGGCCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAA 1915726 >seq5 Length=1963011 Score = 96.9 bits (106), Expect = 4e-15 Identities = 459/715 (64%), Gaps = 22/715 (3%) Strand=Plus/Minus Query 53949 GTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGA-CATTCATCCGGACACATCAAC 54007 ||||||||||| ||||| || | |||| ||| ||| | ||| | ||||| | |||| Sbjct 1037541 GTTCAAACTCGGGGCCCCACACGTCTTCCAGTCCCGGAGCCTTCTTG-GGACAGAACAAC 1037483 Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 ||||||| | || | || || || ||||| || || || || | ||| | || Sbjct 1037482 GACCACTTTTCGCCCCGCTCGACCCGCTTCATGAACAGGTCGGGCACCCACAATGCGTAG 1037423 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT---AAGATCGAGGAAC 54124 || || || | || ||| | || ||| ||| || ||||| |||| ||| || Sbjct 1037422 AACAGGTCCCGGGCTCTGTTCTCTTCGGCTCC---ATGGTTTTTCCGCAGATTGAGAAAA 1037366 Query 54125 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTT 54184 | | ||| || | |||||||| |||| || |||| | | || || || ||||| Sbjct 1037365 TCGAGAATGTCGGCGTGCCACGGCTCCAGATAGATGGCAAACGCGCCGGGACGCTTGTTC 1037306 Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || ||||| || | ||| || |||||||| || | ||||| | ||| || | || ||| Sbjct 1037305 CCACCCTGGTCCACGTACCTCGCGGTGTTGTTGAACACTCTGAGCATGGGCACGATGCCA 1037246 Query 54245 TTGGATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||||| || | | ||| | || ||||| || |||| || || || || Sbjct 1037245 CTGGATCTTCCTTGAGACCCTGTAATAATAGC-GCCCTTGGCTCGGATGTTGTGGATATG 1037187 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA-TCGT-TTTAACGTATCATAG 54361 ||||| || || || || |||| |||||| |||||| ||| || | ||||| ||| Sbjct 1037186 CAGACCGATGCCGCCGGCGGTTTTCGAGATT--TGCGCACACGTCTTGAGGGTATCGTAG 1037129 Query 54362 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 54421 || || || || || | |||| | |||||||| |||| ||| | Sbjct 1037128 ATTCCGTCGATGGAGTCCGCAGCCATGGCCACCAGAAAACACGACGACAGCTGGCCCTGG 1037069 Query 54422 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA--GAAAGTA 54479 || || || || || | ||| ||||| || ||||| ||| || || || || Sbjct 1037068 GGGGTGCCTGCGTTGAAGAGGGTGGGAGAGGCATGCGTGAAC--TTGCGCAGCGACAGAG 1037011 Query 54480 GATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 54539 ||||||| |||| | | | || || | || || || | || || |||| Sbjct 1037010 CGGTGTACGTGTCGAGCACCTTGGCGATGTCGTCTCCGTGGATCCCCAGAGCCACGCGCA 1036951 Query 54540 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT--TATTTTCAGCAAGTAGGATTT 54597 | | |||||| ||||| | |||||| | | ||| | || ||||| ||||| || Sbjct 1036950 TGAGCATGTGTTGAGGACGTTCAAC--TATAGTTCCTCCGGTTCGCAGCAGATAGGACTT 1036893 Query 54598 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 54652 ||||| || || || ||||| || ||| | | |||||| ||||| | |||| Sbjct 1036892 TTCCAGCGTCTTGAAGCCAAAGTACGAGTAGGTGAGGTCTCGGTCGTAGACAATA 1036838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721310560720