Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016-
03-01] 39 sequences; 21,750,525 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq2 179 4e-40
seq3 165 1e-35
seq5 96.9 4e-15
>seq2
Length=2949780
Score = 179 bits (198), Expect = 4e-40
Identities = 468/711 (66%), Gaps = 2/711 (0%)
Strand=Plus/Plus
Query 53954 AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCAC 54013
|||||||| || | || | || | || ||||| || | || ||||| | | ||||
Sbjct 79994 AACTCGTCGCCGTAGACGTCATCAAGGCCGGGACACTCGTTGGGGCACATGAGGGTCCAC 80053
Query 54014 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 54073
|| ||| | || ||||| | ||| || || || || ||||| ||||| | || |||
Sbjct 80054 TCGGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCAGAGAGCCAGGAACAGA 80113
Query 54074 TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 54133
|||| || || | ||||| || || |||||| || ||| |||| | | |
Sbjct 80114 TCTCGGGCTCGAATCTCCTCCTTACCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGACG 80173
Query 54134 TCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGA 54193
|| ||||| || |||| ||| |||| | |||| || || ||||| || |||||
Sbjct 80174 TCGTCGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCGCCCTGG 80233
Query 54194 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCA 54253
|| | ||||| ||||||||| || || |||| || ||| || | ||||| ||||| |
Sbjct 80234 TCGACGTATCGAGCGGTGTTGTTGTACACTCGCAGCATGGGCACGATACCGTTGGAGGTT 80293
Query 54254 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATC 54313
|| ||||| || | ||| ||| || | || || || || || || ||||| ||
Sbjct 80294 CCGTTGGTTCCAGCGATGTAGGAGCCGGTAGCTCGGATGTTGTGGATGGACAGACCAATG 80353
Query 54314 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 54373
|| || || || || || | || || || | || || |||||||| || ||
Sbjct 80354 CCTCCAGCGGACTTGGAAATGAGAGCACAAGTCTTGAGAGTGTCGTAGATGCCGTCGATG 80413
Query 54374 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 54433
|| ||| ||||||| | || ||||| ||||| ||| | | || || ||
Sbjct 80414 GAGTCGTCCTTCATGTTGACGAGGAAACACGACGACATCTGGGGCTGGGGGGTGCCTGCG 80473
Query 54434 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATTGTACGTCTC 54492
|| | | ||| |||||||| || || || | || | ||| | |||| ||||| |||||
Sbjct 80474 TTGTACAGGGTGGGAGAAGCATGGGTGAAGTACTTCTGAGACATGTAG-TTGTAGGTCTC 80532
Query 54493 GATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 54552
||||||| | | || || || || || || | || ||||| | ||| |||||
Sbjct 80533 GATAGCTCGGGCAATGTCGTCGCCGTGGATACCGACAGACACTCGCATGATCATCTGCTG 80592
Query 54553 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAA 54612
|||||| ||| | | ||| | | ||||| ||| | | |||| ||| || ||
Sbjct 80593 AGGTCTCTCAGCAACGGCACCGTTGACTCGCAGCAGGTATGCTCGCTCCAGAGTCTTGAA 80652
Query 54613 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663
||||| |||||||| | ||||||| ||||| | ||| || ||||||
Sbjct 80653 GCCAAAGTAGTTGTAGGTGAAGTCTCTGTCGTAGAGAATGGCTCCGTTGAG 80703
>seq3
Length=2682169
Score = 165 bits (182), Expect = 1e-35
Identities = 396/597 (66%), Gaps = 8/597 (1%)
Strand=Plus/Plus
Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185
|||| || ||| || || || ||| ||||||||||||| || | ||||||||
Sbjct 1915131 AACAGCAGACAGGCAAAGTCCGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAG 1915190
Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245
|| || || |||||||| || || ||||| || ||||| || ||||| ||||| || ||
Sbjct 1915191 AAGGTCAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCG 1915250
Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CG 24302
|| || || || || || || || ||||||||||| |||| || ||| | || ||
Sbjct 1915251 GAGAAAAAGATGCCCTCCACGGCGGCAAAGGCAATGAGTCGCTCGCCAAAGGTGGACTCG 1915310
Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362
||| |||||||| | ||||| ||||||||||| || | || || || |||||
Sbjct 1915311 TCGTCGGAGATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCG 1915370
Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422
|| || || || || ||| || || || || || | ||||| || |||| ||
Sbjct 1915371 ATGGCGTTGAACAGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGC 1915430
Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482
|| ||||||| || ||||| || || || || || |||||||| || | |||
Sbjct 1915431 GAGTAGGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCC 1915490
Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542
|||| ||| || || |||| || || | | || || || || || |||||
Sbjct 1915491 TCGGGGGCCTGCACCTCGCCGGAAAACCGCTCCACCAGGTTCTCGTTGACGATGCCGTCC 1915550
Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AG 24598
||| ||||| || |||| || || || || | ||||| | |||| |
Sbjct 1915551 GAGGCGGCAAAGAAGGCCAGCACGTGGGAGATGAAGAACCGCTCGTC-GTTGTTGAGCCG 1915609
Query 24599 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 24658
|| | ||| || || || || | ||| | ||| || | ||||| || || ||
Sbjct 1915610 GTTCTCCCAGTCGCCCATGTCCTTGCCGAGATCGATTTCCTCGGCCGTCCAGAACGACGC 1915669
Query 24659 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715
||| ||||| || ||||| | |||||| || || || || || || || | |||||
Sbjct 1915670 CTCGGCCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAA 1915726
>seq5
Length=1963011
Score = 96.9 bits (106), Expect = 4e-15
Identities = 459/715 (64%), Gaps = 22/715 (3%)
Strand=Plus/Minus
Query 53949 GTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGA-CATTCATCCGGACACATCAAC 54007
||||||||||| ||||| || | |||| ||| ||| | ||| | ||||| | ||||
Sbjct 1037541 GTTCAAACTCGGGGCCCCACACGTCTTCCAGTCCCGGAGCCTTCTTG-GGACAGAACAAC 1037483
Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067
||||||| | || | || || || ||||| || || || || | ||| | ||
Sbjct 1037482 GACCACTTTTCGCCCCGCTCGACCCGCTTCATGAACAGGTCGGGCACCCACAATGCGTAG 1037423
Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT---AAGATCGAGGAAC 54124
|| || || | || ||| | || ||| ||| || ||||| |||| ||| ||
Sbjct 1037422 AACAGGTCCCGGGCTCTGTTCTCTTCGGCTCC---ATGGTTTTTCCGCAGATTGAGAAAA 1037366
Query 54125 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTT 54184
| | ||| || | |||||||| |||| || |||| | | || || || |||||
Sbjct 1037365 TCGAGAATGTCGGCGTGCCACGGCTCCAGATAGATGGCAAACGCGCCGGGACGCTTGTTC 1037306
Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244
|| ||||| || | ||| || |||||||| || | ||||| | ||| || | || |||
Sbjct 1037305 CCACCCTGGTCCACGTACCTCGCGGTGTTGTTGAACACTCTGAGCATGGGCACGATGCCA 1037246
Query 54245 TTGGATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTAATTGA 54303
||||| || | | ||| | || ||||| || |||| || || || ||
Sbjct 1037245 CTGGATCTTCCTTGAGACCCTGTAATAATAGC-GCCCTTGGCTCGGATGTTGTGGATATG 1037187
Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA-TCGT-TTTAACGTATCATAG 54361
||||| || || || || |||| |||||| |||||| ||| || | ||||| |||
Sbjct 1037186 CAGACCGATGCCGCCGGCGGTTTTCGAGATT--TGCGCACACGTCTTGAGGGTATCGTAG 1037129
Query 54362 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 54421
|| || || || || | |||| | |||||||| |||| ||| |
Sbjct 1037128 ATTCCGTCGATGGAGTCCGCAGCCATGGCCACCAGAAAACACGACGACAGCTGGCCCTGG 1037069
Query 54422 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA--GAAAGTA 54479
|| || || || || | ||| ||||| || ||||| ||| || || || ||
Sbjct 1037068 GGGGTGCCTGCGTTGAAGAGGGTGGGAGAGGCATGCGTGAAC--TTGCGCAGCGACAGAG 1037011
Query 54480 GATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 54539
||||||| |||| | | | || || | || || || | || || ||||
Sbjct 1037010 CGGTGTACGTGTCGAGCACCTTGGCGATGTCGTCTCCGTGGATCCCCAGAGCCACGCGCA 1036951
Query 54540 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT--TATTTTCAGCAAGTAGGATTT 54597
| | |||||| ||||| | |||||| | | ||| | || ||||| ||||| ||
Sbjct 1036950 TGAGCATGTGTTGAGGACGTTCAAC--TATAGTTCCTCCGGTTCGCAGCAGATAGGACTT 1036893
Query 54598 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 54652
||||| || || || ||||| || ||| | | |||||| ||||| | ||||
Sbjct 1036892 TTCCAGCGTCTTGAAGCCAAAGTACGAGTAGGTGAGGTCTCGGTCGTAGACAATA 1036838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721310560720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |