Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 513 1e-140 seq2 150 2e-31 seq7 129 6e-25 >seq3 Length=2682169 Score = 513 bits (568), Expect = 1e-140 Identities = 640/865 (74%), Gaps = 19/865 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||||||||| ||||||| ||| ||||| ||| | |||||||| || |||| || Sbjct 1915756 GAGCCGCTGCTCAAGGAGAACCACCGGCGGTTTGTGCTCTTCCCCATCCAGTACCACGAG 1915697 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||||||||||||||| | |||||| | || || Sbjct 1915696 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGACGGCCGAGGAAATCGATCTC 1915637 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||||||| || | ||| || ||||||| |||||| Sbjct 1915636 GGCAAGGACATGGGCGACTGGGAGAACCGGCTCAACAACGACGAGCGGTTCTTCATCTCC 1915577 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||||||||||| || |||||| |||||||||||||||||||| ||||| ||||| Sbjct 1915576 CACGTGCTGGCCTTCTTTGCCGCCTCGGACGGCATCGTCAACGAGAACCTGGTGGAGCGG 1915517 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || | |||||||||| ||||||| ||||||||||||||| |||||| ||| Sbjct 1915516 TTTTCCGGCGAGGTGCAGGCCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATGATG 1915457 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCG 116929 |||||| | |||||||||| || ||| || |||||||| ||| | | | | | Sbjct 1915456 GAGAACATCCACTCGGAAACCTACTCGCTGCTGATCGACACATACATCAAGGACCCCAAG 1915397 Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 ||| ||| || | | ||| |||||||||||||| || || ||| |||| |||||||| Sbjct 1915396 GAGC-GAACCTACCT--GTTCAACGCCATCGAGACCATTCCCTGCATCAAGAAGAAGGCC 1915340 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || |||||||| |||||| ||| | ||| || |||| |||||||| || | ||| Sbjct 1915339 GACTGGGCGCTCAAGTGGATCTCCGACGACGAGTCCACCTTTGGCGAGCGACTCATTGCC 1915280 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 || || ||||| |||||| |||| || || ||| || ||| |||| || ||||||||| Sbjct 1915279 TTTGCCGCCGTGGAGGGCATCTTTTTCTCCGGCTCGTTTGCCTCCATCTTCTGGCTCAAG 1915220 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || || || ||||||||||||||||| ||| |||||||||||||||| | ||||||||| Sbjct 1915219 AAGCGAGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGT 1915160 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229 ||||| |||||||||||| |||||||| ||| | | | | || || | | | Sbjct 1915159 CTGCACACGGACTTTGCCTGTCTGCTGTTCTCGCACCTCGAGAACCGGCCCTCCAAGAAG 1915100 Query 117230 CGCGTC-AGG--GAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 ||| ||| | ||| || ||| || || | |||||||||| ||||| ||||| Sbjct 1915099 ATTGTCGAGGACGTGATTGT---CGAGGCCGTTGGCATCGAGCAGGAGTTCCTGACCGAC 1915043 Query 117287 GCGCTGCCGGTGC-GTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGT 117344 ||||| || ||| |||||||||| | || || || | |||| || ||||| |||| Sbjct 1915042 GCGCT-CCCCTGCGGTCTGCTGGGCATGAA-CGCCAAGCTCATGTGCCAGTACATTGAGT 1914985 Query 117345 TCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACC 117404 | || |||||| |||||||| | | || | | ||||| ||||||| | |||||| Sbjct 1914984 TTGTGGCCGACCGGCTGCTGGTGGCCCTCGGAAACTCCAAGGTCTACAACTCCACCAACC 1914925 Query 117405 CGCTGGACTTTATGAACCTCATCTC 117429 | | ||||| ||| | |||||| Sbjct 1914924 CCTTCGACTTCATGGAGAACATCTC 1914900 >seq2 Length=2949780 Score = 150 bits (166), Expect = 2e-31 Identities = 164/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 ||||||| || || || || || || ||||| ||||||||| |||| || || | ||| Sbjct 2456518 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCG 2456577 Query 40751 ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | |||| ||||| || || | ||||| |||||||| ||| |||||||| Sbjct 2456578 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 2456636 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| ||| ||||| ||||| || |||| || || || ||||||||| Sbjct 2456637 CAGCGACTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAAC 2456696 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||| ||||| || || |||| Sbjct 2456697 ATCCAGAAGGAGTCCACTCTGCACCTGGTTCTGCG 2456731 >seq7 Length=1109975 Score = 129 bits (142), Expect = 6e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||||||| || || || || || || || || || || |||||| | || || || | Sbjct 1062554 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTT 1062613 Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | |||| ||||| || || | ||||| ||||| || ||| ||||| Sbjct 1062614 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 1062672 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||||| |||| ||| || || ||||| || |||| || ||||| |||||| Sbjct 1062673 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 1062732 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||||| |||| || ||||| || |||| Sbjct 1062733 AACATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 1062770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218948830640