Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 seq7 96.9 3e-15 seq5 82.4 7e-11 >seq2 Length=2949780 Score = 107 bits (118), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | || |||| ||| | || ||||| || || |||||||| || Sbjct 2456745 TACCTCCTCGGAGACGCAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 2456686 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||||||||||| || || ||| ||||||| |||||||| || || | Sbjct 2456685 AAAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCCGGGG 2456626 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| || || || || | || | |||||| | ||| | Sbjct 2456625 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCA 2456566 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA-TGGCTTA 118744 |||||| ||| | || ||||| || || || || ||||| || |||| ||| ||| Sbjct 2456565 CCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTGGGTTA 2456510 >seq7 Length=1109975 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| || | || || ||||||||||| Sbjct 1062758 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGC 1062699 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| |||| || |||||||| || || || || ||||||||||| || || Sbjct 1062698 TTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTG 1062639 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||| | ||| ||||| | ||| | || || ||||| Sbjct 1062638 GACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGTA 1062579 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || |||||||||||||| Sbjct 1062578 AGGGTCTTGACAAAAATCTGCAT 1062556 >seq5 Length=1963011 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 133221 TGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAAC 133280 ||||||||||| ||||||||||||| | || || | || || | || |||||| | Sbjct 1038373 TGGTTGACCACCAGAAACTCGCCGGCCTGCACTCGCCGCAGGTAAATGTTGGACGTGTAG 1038314 Query 133281 GGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCC 133340 || ||||| | ||||||| |||||| ||||| | || | || || |||||| ||| Sbjct 1038313 GGCTCGAAGCACTCGTTGTGGCCGAGGATCTGGGAGGTAGAAGCGGTAGGCATGGGAGCC 1038254 Query 133341 ACCAACAAAGAGTTTCTTACGCCGTACTTG 133370 |||| || ||||| | | ||| | |||| Sbjct 1038253 ACCAGCAGCGAGTTGCGCATGCCATGCTTG 1038224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830193794988