Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq5 147 5e-30 seq2 118 2e-21 >seq5 Length=1963011 Score = 147 bits (162), Expect = 5e-30 Identities = 389/589 (66%), Gaps = 15/589 (3%) Strand=Plus/Plus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||||| ||||| |||||||| || || ||||| || || | || | || || || Sbjct 1036871 CTTTGGCTTCAAGACGCTGGAAAAGTCCTATCTGCTGCGAACCGGAGGAACTATAGTTGA 1036930 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945 ||| ||| |||||| | ||||| |||||| | ||||| ||| || ||||| | | Sbjct 1036931 ACGTCCTCAACACATGCTCATGCGCGTGGCTCTGGGGATCCACGGAGACGACATCGCCAA 1036990 Query 248946 CGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCT 249005 |||||||| |||||||||| || ||| | | || |||||| | || || || Sbjct 1036991 GGTGCTCGACACGTACACCGCTCTGTCGCTGCGCAAGTTCACGCATGCCTCTCCCACCCT 1037050 Query 249006 CTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGA 249065 ||||||||| || ||| | | |||||| ||||| ||||| | |||||| | Sbjct 1037051 CTTCAACGCAGGCACCCCCCAGGGCCAGCTGTCGTCGTGTTTTCTGGTGGCCATGGCTGC 1037110 Query 249066 CGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTAAATT 249122 ||||| ||||||| || || || || || | ||||| ||| | || || ||| Sbjct 1037111 GGACTCCATCGACGGAATCTACGATACCCTCA---AGACGTGTGCGCAAATCTCGAAAAC 1037167 Query 249123 CGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGG 249182 ||| ||||| |||||||| || |||||||||||| ||||| | || | ||| Sbjct 1037168 CGCCGGCGGCATCGGTCTGCATATCCACAACATCCGAGCCAAGGGCGCTATTATTACAGG 1037227 Query 249183 TACAAATGG--GGT-CAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGC 249239 | | || | | ||| ||| ||||| ||| | || || || | |||||| Sbjct 1037228 GTCTCAAGGAAGATCCAG---TGGCATCGTGCCCATGCTCAGAGTGTTCAACAACACCGC 1037284 Query 249240 CAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGT 249296 |||| | | |||||| ||| | || || |||| ||||| ||| |||| Sbjct 1037285 GAGGTACGTGGACCAGGGTGGGAACAAGCGTCCCGGCGCGTTTGCCATCTATCTGGAGCC 1037344 Query 249297 GTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCAT 249356 |||||||||||| || | || || || | || || ||| | || ||| | Sbjct 1037345 GTGGCACGCCGACATTCTCGATTTTCTCAATCTGCGGAAAAACCATGGAGCCGAAGAGAA 1037404 Query 249357 GAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 ||||| || ||||| ||||||| ||||||| ||||| |||||||| Sbjct 1037405 CAGAGCCCGGGACCTGTTCTACGCATTGTGGGTGCCCGACCTGTTCATG 1037453 >seq2 Length=2949780 Score = 118 bits (130), Expect = 2e-21 Identities = 659/1051 (63%), Gaps = 48/1051 (5%) Strand=Plus/Minus Query 248426 TCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCGCGCATCA 248485 ||| |||||| ||||| ||||| || ||| | ||||||||||| | || || |||| Sbjct 81086 TCATCAAGCGAGACGGCCGCAAGGAGTCCGTCCAGGTCGACAAAATCACTGCTCGAATCA 81027 Query 248486 AGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGCCCAGAAAG 248545 || || |||||||| || || ||| || ||| || | | ||| ||| || Sbjct 81026 AGCGTCTGTGTTATGGCCTTGATCCCGACCACGTGGACCCCATCCAGATCACCCTCAAGA 80967 Query 248546 TTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCTGCGGAGA 248605 || || ||| ||||| || || | || | || || |||| | ||||| |||| Sbjct 80966 TTGCGTCTGGCATCTACGAGGGCGTGAGCACCATTGAGCTCGACAATCTGGCTGCCGAGA 80907 Query 248606 CGGCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGAGGATCGCCG 248665 | ||||| |||||| | | | ||||||||||| || | ||||| | | ||||||| Sbjct 80906 CCGCGGCCTACATGACCACTCTGCACCCCGACTATGCGATTCTGGCTGCCCGAATCGCCG 80847 Query 248666 TCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAA--------ACCATGGCTG- 248716 | || | || ||||| | || || || ||| ||| | || || ||| Sbjct 80846 TGTCCAACCTGCACAAGCAGACCAAGAAGCAGTTT-TCGCAGGTGGTCTACGAT--CTGT 80790 Query 248717 ACC--TACATGC-------CTATGGGATGG--TCGCCGATGACGTCCA------------ 248753 ||| ||| || | | || | ||||| ||| ||| | Sbjct 80789 ACCACTACGTGAACCCCCGCAACAAGAAGCACTCGCCCATGGTGTCTAAGGAGCTGTACG 80730 Query 248754 -CACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATT 248812 |||||| |||| |||||| || || |||| || ||| ||||| || ||| | Sbjct 80729 ACACCGTG---CAGGCGAACGCGGACGAGCTCAACGGAGCCATTCTCTACGACAGAGACT 80673 Query 248813 TGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATG 248872 | ||| | | ||||| ||||| || |||||| | | || || || | | | | Sbjct 80672 TCACCTACAACTACTTTGGCTTCAAGACTCTGGAGCGAGCATACCTGCTGCGAGTCAACG 80613 Query 248873 GCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGG 248932 | | | || || |||||| ||| | ||||||||| ||||||| || ||| | Sbjct 80612 GTGCCGTTGCTGAGAGACCTCAGCAGATGATCATGCGAGTGTCTGTCGGTATCCACGGCG 80553 Query 248933 ATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATG 248992 | ||||| | | | ||||||| |||| | ||| | | | | || |||| Sbjct 80552 ACGACATTGCCCGAGCTATCGAGACCTACAACTACATGTCTCAGAAGTACTTCACCCATG 80493 Query 248993 CCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTC 249052 | | || || || | |||||| || ||| | | ||| || ||||| || || Sbjct 80492 CTTCTCCCACCCTGTACAACGCAGGCACCCCCCAGCCCCAGATGTCGTCGTGTTTCCTCG 80433 Query 249053 TTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG---GCGA 249109 | |||| | |||||||| |||||||||| || ||||| || || ||| || Sbjct 80432 TCAACATGAAGGACGACTCCATCGACGGCATCTACGACACTCTCAA---GACTTGTGCTC 80376 Query 249110 AGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTT 249169 ||||| || | ||| || || || ||||| ||| || |||||||||||| | || | Sbjct 80375 TCATTTCCAAGTCCGCTGGAGGCATTGGTCTGTCCATCCACAACATCCGAGCTACCGGCT 80316 Query 249170 CGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTG 249229 | |||||| || || || || | | |||||||| ||| | || ||| | Sbjct 80315 CCTACATCGCTGGAACCAACGGAACCTCCAACGGTATCGTGCCCATGCTGCGAGTGTACA 80256 Query 249230 AGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGT 249286 | |||||| | | | || |||||| ||| | ||| || | || ||||||| Sbjct 80255 ACAACACCGCTCGATACGTCGACCAGGGCGGCAACAAGCGACCCGGAGCCTTTGCCATGT 80196 Query 249287 ATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCA 249346 | |||| ||||||| ||| | || |||||| || || ||||||| |||| | Sbjct 80195 ACCTGGAGCCCTGGCACGACGACGTCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGTA 80136 Query 249347 ACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGC 249406 | ||| || |||| || || || ||| | || ||| || ||||| |||||||| Sbjct 80135 AGGAGGAGATTCGAGCCCGAGATCTGTTCCTGGCTCTCTGGATCCCCGACCTGTTCATGG 80076 Query 249407 GCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437 || ||| || ||| ||| ||||| || Sbjct 80075 AGCGAGTCGAGCAGAACGCCGAGTGGACCCT 80045 Score = 95.1 bits (104), Expect = 3e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 249864 GTCCAACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACAT 249923 |||||||||| ||||| || || ||||| || |||| ||| ||| | ||| Sbjct 79606 GTCCAACATGCGACACCGACCCATTGCTCTGGGTGTCCAGGGTCTGGCTGACACTTTCAT 79547 Query 249924 GGTGATGGGATTCCCCTTCGAGTCAGAGGAGGCAGCGACGCTAAATAAACAGATTTTCGA 249983 || | || | ||||| ||||| |||||||| || ||| || | ||||| ||||| Sbjct 79546 GGCCCTCCGACTTCCCTTTGAGTCCGAGGAGGCCAAGAAGCTCAACATCCAGATCTTCGA 79487 Query 249984 GACCATCTATCACGGGAGCGTCGAGGCGTCCATCGAAAGGGCCAAGATCGACGGACCATA 250043 ||||||||| ||||| ||| ||||| ||| ||| | |||| ||||| | || Sbjct 79486 GACCATCTACCACGGAGCCGTTGAGGCCTCCTACGAGATGGCCCTTGAGGACGGCGCCTA 79427 Query 250044 CGAGAGTTTTCAGGGGTCGCCCGCGTCGTTCGGGAAGCTTCAGTTTGATCTTTGG 250098 ||||| || ||||| || || || || || | || ||||||||||| ||| Sbjct 79426 CGAGACCTTCCAGGGCTCTCCTGCCTCCAAGGGTGACCTGCAGTTTGATCTGTGG 79372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765863452352