Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 187 3e-42 seq2 178 2e-39 >seq3 Length=2682169 Score = 187 bits (206), Expect = 3e-42 Identities = 401/597 (67%), Gaps = 8/597 (1%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || ||| || || || ||||||||||||||||| || | ||||| || Sbjct 1915131 AACAGCAGACAGGCAAAGTCCGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAG 1915190 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || |||||||| || || ||||| || ||||| || ||||| || || || ||| Sbjct 1915191 AAGGTCAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCG 1915250 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33749 || || ||||| || || || || ||||||||||| |||| ||| ||| | || || Sbjct 1915251 GAGAAAAAGATGCCCTCCACGGCGGCAAAGGCAATGAGTCGCTCGCCAAAGGTGGACTCG 1915310 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 ||| |||||||| | ||||| ||||||||||| || | || || || || || Sbjct 1915311 TCGTCGGAGATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCG 1915370 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 ||||| || || || ||| || || || || || | || || ||||||| || Sbjct 1915371 ATGGCGTTGAACAGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGC 1915430 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 || ||||||| || ||||| || || ||||| || |||||||| || | ||| Sbjct 1915431 GAGTAGGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCC 1915490 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 |||| |||||| || |||| || || | | || || || || || || || Sbjct 1915491 TCGGGGGCCTGCACCTCGCCGGAAAACCGCTCCACCAGGTTCTCGTTGACGATGCCGTCC 1915550 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AG 34045 ||| ||||| || |||| || || || || | ||||| | |||| | Sbjct 1915551 GAGGCGGCAAAGAAGGCCAGCACGTGGGAGATGAAGAACCGCTCGTC-GTTGTTGAGCCG 1915609 Query 34046 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 34105 || | ||| || || || || | ||| | ||| || | ||||| || || || Sbjct 1915610 GTTCTCCCAGTCGCCCATGTCCTTGCCGAGATCGATTTCCTCGGCCGTCCAGAACGACGC 1915669 Query 34106 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 ||| ||||| || ||||| | |||||| || || || ||||| ||||| | ||||| Sbjct 1915670 CTCGGCCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAA 1915726 >seq2 Length=2949780 Score = 178 bits (196), Expect = 2e-39 Identities = 461/700 (66%), Gaps = 2/700 (0%) Strand=Plus/Plus Query 63191 GAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCA 63250 ||||||||| || | || | || | | ||||| || | || ||||| | | ||| Sbjct 79993 GAACTCGTCGCCGTAGACGTCATCAAGGCCGGGACACTCGTTGGGGCACATGAGGGTCCA 80052 Query 63251 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 63310 ||| ||| | || ||||| | ||| || || || || ||||| ||||| | || || Sbjct 80053 CTCGGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCAGAGAGCCAGGAACAG 80112 Query 63311 ATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 63370 ||||| | || | ||||| || || |||||| || ||| |||| | | | Sbjct 80113 ATCTCGGGCTCGAATCTCCTCCTTACCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGAC 80172 Query 63371 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 63430 || ||||| || |||| ||| ||||| | |||| || || ||||| || ||||| Sbjct 80173 GTCGTCGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCGCCCTG 80232 Query 63431 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATAT 63490 || | ||||| ||||||||| || || |||| || ||| || | |||||||| || | Sbjct 80233 GTCGACGTATCGAGCGGTGTTGTTGTACACTCGCAGCATGGGCACGATACCGTTGGAGGT 80292 Query 63491 ACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTAT 63550 || ||||| || | ||| ||| || | || || || || || || ||||| || Sbjct 80293 TCCGTTGGTTCCAGCGATGTAGGAGCCGGTAGCTCGGATGTTGTGGATGGACAGACCAAT 80352 Query 63551 TCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTAT 63610 || || || || || || | || || || | ||||| |||||||| || || Sbjct 80353 GCCTCCAGCGGACTTGGAAATGAGAGCACAAGTCTTGAGAGTGTCGTAGATGCCGTCGAT 80412 Query 63611 GCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGC 63670 | || || ||||||| | || ||||| ||||| ||| | | | || || || Sbjct 80413 GGAGTCGTCCTTCATGTTGACGAGGAAACACGACGACATCTGGGGCTGGGGGGTGCCTGC 80472 Query 63671 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATTGTACGTCT 63729 || | | ||| |||||||| || || || | || | ||| | |||| ||||| |||| Sbjct 80473 GTTGTACAGGGTGGGAGAAGCATGGGTGAAGTACTTCTGAGACATGTAG-TTGTAGGTCT 80531 Query 63730 CAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 63789 | |||||| | | || || || || || || | || ||||| | ||| |||| Sbjct 80532 CGATAGCTCGGGCAATGTCGTCGCCGTGGATACCGACAGACACTCGCATGATCATCTGCT 80591 Query 63790 GAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 63849 ||||||| ||| ||| ||| | | || || ||| | | |||| ||| || | Sbjct 80592 GAGGTCTCTCAGCAACGGCACCGTTGACTCGCAGCAGGTATGCTCGCTCCAGAGTCTTGA 80651 Query 63850 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 | ||||| |||||||| | ||||||| ||||| | ||| Sbjct 80652 AGCCAAAGTAGTTGTAGGTGAAGTCTCTGTCGTAGAGAAT 80691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817292963920