Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 >seq3 Length=2682169 Score = 104 bits (114), Expect = 2e-17 Identities = 328/503 (65%), Gaps = 13/503 (3%) Strand=Plus/Minus Query 52564 AAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGT 52623 || |||| || ||||| | || |||||| ||||| | |||| |||| ||| || Sbjct 1915348 AAGAAGGCCGACTGGGCGCTCAAGTGGATCTCCGACGACGAGTCCACCTTTGGCGAGCGA 1915289 Query 52624 CTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTT 52683 || | || ||||| ||||| || | ||||| || || ||||| | || || Sbjct 1915288 CTCATTGCCTTTGCCGCCGTGGAGGGCATCTTTTTCTCCGGCTCGTTTGCCTCCATCTTC 1915229 Query 52684 TACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCG 52742 | |||| || | || | | ||||||||||| || || ||||||| | || || || Sbjct 1915228 TGGCTCAAGAAGCGAGGTC-TCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCCCG 1915170 Query 52743 CGACGAAGGAATGCACACAGATTTTGCGTGTTTG-TATTATAATACGCGCGTTAAAGAAA 52801 ||||| || ||||||| || ||||| ||| || | || | ||| | | || | Sbjct 1915169 AGACGAGGGTCTGCACACGGACTTTGCCTGTCTGCTGTTCT----CGCACCTC---GAGA 1915117 Query 52802 AATTGTCATATGAAAAAATTCTAGA---CATGTTTAAAGAGGCCGTCGACATTGAAAAAG 52858 | | | | | || ||| | || | || || |||||||| | ||| || | | Sbjct 1915116 ACCGGCCCTCCAAGAAGATTGTCGAGGACGTGATTGTCGAGGCCGTTGGCATCGAGCAGG 1915057 Query 52859 AGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACCATGATGTGCG 52918 |||| | || ||||| | ||| || ||||||||||||| | | |||||| Sbjct 1915056 AGTTCCTGACCGACGCGCTCCCCTGCGGTCTGCTGGGCATGAACGCCAAGCTCATGTGCC 1914997 Query 52919 AGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCAGCCGAAATACTATA 52978 ||||||| |||||||| || ||| | ||| || || ||||| | | || ||| | Sbjct 1914996 AGTACATTGAGTTTGTGGCCGACCGGCTGCTGGTGGCCCTCGGAAACTCCAAGGTCTACA 1914937 Query 52979 ATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAACAAACTTTT 53038 | | |||||||| || ||| | ||||| ||||| | ||||| || ||||| | Sbjct 1914936 ACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGCAAGACCAACTTCT 1914877 Query 53039 TCGAGAGACGTGTGGGCGAGTAC 53061 |||||| || ||| ||| ||| Sbjct 1914876 TCGAGAAGCGGGTGTCCGACTAC 1914854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063758168800