Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 197 2e-45 seq2 187 4e-42 seq5 102 1e-16 >seq3 Length=2682169 Score = 197 bits (218), Expect = 2e-45 Identities = 402/596 (67%), Gaps = 6/596 (1%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || ||| || || || ||||||||||||||||| || || |||||||| Sbjct 1915131 AACAGCAGACAGGCAAAGTCCGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAG 1915190 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || || |||||||| || || ||||| || ||||| || ||||| ||||| || || Sbjct 1915191 AAGGTCAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCG 1915250 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CG 50127 || || ||||| || || || ||||||||||||| |||| ||| ||| | ||| || Sbjct 1915251 GAGAAAAAGATGCCCTCCACGGCGGCAAAGGCAATGAGTCGCTCGCCAAAGGTGGACTCG 1915310 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 ||| |||||||| | ||||| ||||||||||| || | || || || || || Sbjct 1915311 TCGTCGGAGATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCG 1915370 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 ||||| || || || ||| || || || || || | || || ||||||| || Sbjct 1915371 ATGGCGTTGAACAGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGC 1915430 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || ||||||| || ||||| || || ||||| || |||||||| || | ||| Sbjct 1915431 GAGTAGGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCC 1915490 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 |||| |||||| || |||| || || | | || || || || || ||||| Sbjct 1915491 TCGGGGGCCTGCACCTCGCCGGAAAACCGCTCCACCAGGTTCTCGTTGACGATGCCGTCC 1915550 Query 50368 CTGGCTGCAAAAAACGCCAATACATG---TTTTATAAAATGTTTTTCGTTGGGTGTTAGT 50424 ||| ||||| || |||| || || | | || | | |||||| | Sbjct 1915551 GAGGCGGCAAAGAAGGCCAGCACGTGGGAGATGAAGAACCGCTCGTCGTTGTTGAGCCGG 1915610 Query 50425 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 50484 || | ||| || || || || | ||| | ||| || | ||||| || || ||| Sbjct 1915611 TTCTCCCAGTCGCCCATGTCCTTGCCGAGATCGATTTCCTCGGCCGTCCAGAACGACGCC 1915670 Query 50485 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 || ||||| || ||||| | |||||| || || || ||||| ||||| | ||||| Sbjct 1915671 TCGGCCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAA 1915726 >seq2 Length=2949780 Score = 187 bits (206), Expect = 4e-42 Identities = 463/700 (66%), Gaps = 2/700 (0%) Strand=Plus/Plus Query 79863 GAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCA 79922 ||||||||| || | || || || | || ||||| |||| || ||||| | | ||| Sbjct 79993 GAACTCGTCGCCGTAGACGTCATCAAGGCCGGGACACTCGTTGGGGCACATGAGGGTCCA 80052 Query 79923 CTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 79982 ||| | | | || ||||| | ||| || || || || ||||| ||||| | || || Sbjct 80053 CTCGGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCAGAGAGCCAGGAACAG 80112 Query 79983 ATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 80042 ||||| || || | |||||| || || |||||| || ||| |||| | | | Sbjct 80113 ATCTCGGGCTCGAATCTCCTCCTTACCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGAC 80172 Query 80043 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTG 80102 || ||||| || |||| ||| ||||| | |||| ||||| ||||| || ||||| Sbjct 80173 GTCGTCGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCGCCCTG 80232 Query 80103 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 80162 || | ||||| ||||||||| || || |||| || ||| || | ||||| ||||| || Sbjct 80233 GTCGACGTATCGAGCGGTGTTGTTGTACACTCGCAGCATGGGCACGATACCGTTGGAGGT 80292 Query 80163 ACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTAT 80222 || ||||| || | ||| ||| || | || || || || || || ||||| || Sbjct 80293 TCCGTTGGTTCCAGCGATGTAGGAGCCGGTAGCTCGGATGTTGTGGATGGACAGACCAAT 80352 Query 80223 TCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTAT 80282 || || || || || || | || || || | || || |||||||| || || Sbjct 80353 GCCTCCAGCGGACTTGGAAATGAGAGCACAAGTCTTGAGAGTGTCGTAGATGCCGTCGAT 80412 Query 80283 GCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 80342 | || || ||||||| | || ||||| ||||| ||| | | || || || Sbjct 80413 GGAGTCGTCCTTCATGTTGACGAGGAAACACGACGACATCTGGGGCTGGGGGGTGCCTGC 80472 Query 80343 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCT 80401 || | | ||| |||||||| || || || | || | ||||| |||| ||||| |||| Sbjct 80473 GTTGTACAGGGTGGGAGAAGCATGGGTGAAGTACTTCTGAGACATGTAG-TTGTAGGTCT 80531 Query 80402 CAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCT 80461 | |||||| | || || || || || || | || ||||| | ||| |||| Sbjct 80532 CGATAGCTCGGGCAATGTCGTCGCCGTGGATACCGACAGACACTCGCATGATCATCTGCT 80591 Query 80462 GAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAA 80521 ||||||| ||| | | || | | || || ||| | | |||| ||| || | Sbjct 80592 GAGGTCTCTCAGCAACGGCACCGTTGACTCGCAGCAGGTATGCTCGCTCCAGAGTCTTGA 80651 Query 80522 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 | ||||| |||||||| | ||||||| ||||| | ||| Sbjct 80652 AGCCAAAGTAGTTGTAGGTGAAGTCTCTGTCGTAGAGAAT 80691 >seq5 Length=1963011 Score = 102 bits (112), Expect = 1e-16 Identities = 465/721 (64%), Gaps = 26/721 (4%) Strand=Plus/Minus Query 79859 GTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA-CATTCGTCAGGACACATCAAC 79917 |||| |||||| ||||| || || || | ||| ||| | ||| | ||||| | |||| Sbjct 1037541 GTTCAAACTCGGGGCCCCACACGTCTTCCAGTCCCGGAGCCTTCTTG-GGACAGAACAAC 1037483 Query 79918 GACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 79977 ||||||| | | | || || || ||||| || || || || | ||| | || Sbjct 1037482 GACCACTTTTCGCCCCGCTCGACCCGCTTCATGAACAGGTCGGGCACCCACAATGCGTAG 1037423 Query 79978 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTT---AAGATCGAGGAAC 80034 || || || | || ||| | ||| ||| ||| || ||||| |||| ||| || Sbjct 1037422 AACAGGTCCCGGGCTCTGTTCTCTTCGGCTCC---ATGGTTTTTCCGCAGATTGAGAAAA 1037366 Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 | | ||| || | |||||||| |||| || ||||| | | || || || ||||| Sbjct 1037365 TCGAGAATGTCGGCGTGCCACGGCTCCAGATAGATGGCAAACGCGCCGGGACGCTTGTTC 1037306 Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || ||||| || | ||| || |||||||| || | ||||| | ||| || | || ||| Sbjct 1037305 CCACCCTGGTCCACGTACCTCGCGGTGTTGTTGAACACTCTGAGCATGGGCACGATGCCA 1037246 Query 80155 TTGGATGTACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||| | || | | ||| | || ||||| || |||| || || || || Sbjct 1037245 CTGGATCTTCCTTGAGACCCTGTAATAATAGC-GCCCTTGGCTCGGATGTTGTGGATATG 1037187 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA-TCGT-TTTAACGTATCATAG 80271 ||||| || || || || |||| |||||| |||||| ||| || | ||||| ||| Sbjct 1037186 CAGACCGATGCCGCCGGCGGTTTTCGAGATT--TGCGCACACGTCTTGAGGGTATCGTAG 1037129 Query 80272 ATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 80331 || || || ||| || || |||| | |||||||| |||| ||| | Sbjct 1037128 ATTCCGTCGATGGAGTCCGCAGCCATGGCCACCAGAAAACACGACGACAGCTGGCCCTGG 1037069 Query 80332 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA--GACAGTA 80389 || || || || || | ||| ||||| || ||||| ||| || || ||||| Sbjct 1037068 GGGGTGCCTGCGTTGAAGAGGGTGGGAGAGGCATGCGTGAAC--TTGCGCAGCGACAGAG 1037011 Query 80390 GATTGTACGTCTCAATAGCTGATT--CTATATCCCATTGATGAATTCCTACCGCGACACG 80447 ||||||| || ||| || | || || | || || || | || || || Sbjct 1037010 CGGTGTACGTGTC--GAGCACCTTGGCGATGTCGTCTCCGTGGATCCCCAGAGCCACGCG 1036953 Query 80448 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATT--TATTTTCAACAAGTAAGAT 80505 ||| | |||||| ||||| | |||||| | | ||| | || || || || || Sbjct 1036952 CATGAGCATGTGTTGAGGACGTTCAAC--TATAGTTCCTCCGGTTCGCAGCAGATAGGAC 1036895 Query 80506 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 80565 ||||||| || || || ||||| || ||| | | |||||| ||||| | |||| || Sbjct 1036894 TTTTCCAGCGTCTTGAAGCCAAAGTACGAGTAGGTGAGGTCTCGGTCGTAGACAATAGCC 1036835 Query 80566 G 80566 | Sbjct 1036834 G 1036834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268449843960