Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016-
03-01] 39 sequences; 21,750,525 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq3 190 3e-43
seq2 168 9e-37
>seq3
Length=2682169
Score = 190 bits (210), Expect = 3e-43
Identities = 403/598 (67%), Gaps = 10/598 (2%)
Strand=Plus/Plus
Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115
|||| || ||| || || || |||||||||||| |||| || | ||||||||
Sbjct 1915131 AACAGCAGACAGGCAAAGTCCGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAG 1915190
Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175
|| || || |||||||| || || ||||| || ||||| || || || ||||| || ||
Sbjct 1915191 AAGGTCAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCG 1915250
Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 42234
|| || ||||| || || || || ||||||||||| |||| ||| ||| || | |||
Sbjct 1915251 GAGAAAAAGATGCCCTCCACGGCGGCAAAGGCAATGAGTCGCTCGCCA-AAGGTGGACTC 1915309
Query 42235 ---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291
||| |||||||| | ||||| ||||||||||| || | || || || || ||
Sbjct 1915310 GTCGTCGGAGATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTC 1915369
Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351
||||| || || || ||| || || || || || | ||||| ||||||| ||
Sbjct 1915370 GATGGCGTTGAACAGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAG 1915429
Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411
|| |||| || || ||||| || || ||||| || |||||||| || ||||
Sbjct 1915430 CGAGTAGGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGC 1915489
Query 42412 CTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTC 42471
||||| |||| || || |||| || || | | || ||||| || || |||||
Sbjct 1915490 CTCGGGGGCCTGCACCTCGCCGGAAAACCGCTCCACCAGGTTCTCGTTGACGATGCCGTC 1915549
Query 42472 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA--- 42528
||| ||||| || |||| || || || || | |||| || |||| |
Sbjct 1915550 CGAGGCGGCAAAGAAGGCCAGCACGTGGGAGATGAAGAACCGCTCGT-CGTTGTTGAGCC 1915608
Query 42529 -TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATG 42587
|| | ||| || || || || | ||| | ||| || ||||||| || || |
Sbjct 1915609 GGTTCTCCCAGTCGCCCATGTCCTTGCCGAGATCGATTTCCTCGGCCGTCCAGAACGACG 1915668
Query 42588 CTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645
| || ||||| || ||||| | |||||| || || || || || ||||| | |||||
Sbjct 1915669 CCTCGGCCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAA 1915726
>seq2
Length=2949780
Score = 168 bits (186), Expect = 9e-37
Identities = 459/700 (66%), Gaps = 2/700 (0%)
Strand=Plus/Plus
Query 71946 GAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCA 72005
||||||||| || | | | || | || ||||| || || || ||||| | | |||
Sbjct 79993 GAACTCGTCGCCGTAGACGTCATCAAGGCCGGGACACTCGTTGGGGCACATGAGGGTCCA 80052
Query 72006 CTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 72065
||| | | | | ||||| | ||| || || || || ||||| ||||| | || ||
Sbjct 80053 CTCGGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCAGAGAGCCAGGAACAG 80112
Query 72066 ATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 72125
||||| || || | |||||| || || |||||| || ||| |||| | | |
Sbjct 80113 ATCTCGGGCTCGAATCTCCTCCTTACCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGAC 80172
Query 72126 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTG 72185
|| ||||| || |||| ||| ||||| | |||| || || ||||| || |||||
Sbjct 80173 GTCGTCGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCGCCCTG 80232
Query 72186 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGC 72245
|| | ||||| ||||||||| || || |||| || ||| || | ||||| ||||| |
Sbjct 80233 GTCGACGTATCGAGCGGTGTTGTTGTACACTCGCAGCATGGGCACGATACCGTTGGAGGT 80292
Query 72246 ACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTAT 72305
|| ||||| || | ||| ||| || | || || || ||| || || ||||| ||
Sbjct 80293 TCCGTTGGTTCCAGCGATGTAGGAGCCGGTAGCTCGGATGTTGTGGATGGACAGACCAAT 80352
Query 72306 TCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTAT 72365
|| || || || || || | || || || | || || |||||||| || ||
Sbjct 80353 GCCTCCAGCGGACTTGGAAATGAGAGCACAAGTCTTGAGAGTGTCGTAGATGCCGTCGAT 80412
Query 72366 ACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 72425
|| ||| ||||||| | || ||||| ||||| ||| | | || || ||
Sbjct 80413 GGAGTCGTCCTTCATGTTGACGAGGAAACACGACGACATCTGGGGCTGGGGGGTGCCTGC 80472
Query 72426 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCT 72484
|| | | ||| |||||||| || || || | || | ||||| |||| ||||| ||||
Sbjct 80473 GTTGTACAGGGTGGGAGAAGCATGGGTGAAGTACTTCTGAGACATGTAG-TTGTAGGTCT 80531
Query 72485 CAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCT 72544
| |||||| | || || || || || || | || ||||| | ||| ||||
Sbjct 80532 CGATAGCTCGGGCAATGTCGTCGCCGTGGATACCGACAGACACTCGCATGATCATCTGCT 80591
Query 72545 GAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 72604
||||||| ||| | | || | | || || ||| | | |||| ||| || |
Sbjct 80592 GAGGTCTCTCAGCAACGGCACCGTTGACTCGCAGCAGGTATGCTCGCTCCAGAGTCTTGA 80651
Query 72605 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644
| ||||| |||||||| | ||||||| ||||| | |||
Sbjct 80652 AGCCAAAGTAGTTGTAGGTGAAGTCTCTGTCGTAGAGAAT 80691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138872819640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |