Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 2e-12 >seq3 Length=2682169 Score = 87.8 bits (96), Expect = 2e-12 Identities = 285/437 (65%), Gaps = 12/437 (3%) Strand=Plus/Minus Query 50405 CTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCT 50464 ||||||| || || | | || |||||| || || || | ||||| ||||| | Sbjct 1915301 CTTTGGC-GAGCGACTCATTGCCTTTGCCGCCGTGGAGGGCATCTTTTTCTCCGGCTCGT 1915243 Query 50465 TTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACG 50524 |||| |||| || | | || | ||| | ||||||||||| || || ||||| Sbjct 1915242 TTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTCTCCAACG 1915183 Query 50525 AGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGC 50584 || | || || || ||||| || ||||||| |||||||| ||| || | | ||| Sbjct 1915182 AGCTCATCTCCCGAGACGAGGGTCTGCACACGGACTTTGCCTGTCTGCTGTTCT---CGC 1915126 Query 50585 GCGTAAATGAAAAATTATCATACGAAACAATTTT---GGACATGTTCAAAGAAGCCGTCG 50641 | | || || | | | | | ||| | |||| || | || ||||| | Sbjct 1915125 ACCTC---GAGAACCGGCCCTCCAAGAAGATTGTCGAGGACGTGATTGTCGAGGCCGTTG 1915069 Query 50642 ACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAG 50701 |||||| | ||||| | || ||||| | ||| | || ||||||||||||| Sbjct 1915068 GCATCGAGCAGGAGTTCCTGACCGACGCGCTCCCCTGCGGTCTGCTGGGCATGAACGCCA 1915009 Query 50702 ACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGACAAC 50761 | | |||||| |||||||||||||||| || ||| | || || || || ||| | Sbjct 1915008 AGCTCATGTGCCAGTACATTGAGTTTGTGGCCGACCGGCTGCTGGTGGCCCTCGGAAACT 1914949 Query 50762 CGAAATACTATAA-TGCACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGC 50820 | || ||| || | ||| |||||||| || ||| | ||||| ||| ||| ||| Sbjct 1914948 CCAAGGTCTACAACTCCAC-CAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGC 1914890 Query 50821 AAAACAAACTTTTTCGA 50837 || || ||||| ||||| Sbjct 1914889 AAGACCAACTTCTTCGA 1914873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014152830480