Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 306 5e-78 seq5 174 2e-38 seq2 125 1e-23 seq6 122 1e-22 >seq3 Length=2682169 Score = 306 bits (338), Expect = 5e-78 Identities = 592/869 (68%), Gaps = 25/869 (3%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || |||||| ||| || || || ||| | |||||||| ||||| |||| || || Sbjct 1915720 CTCTTCCCCATCCAGTACCACGAGATCTGGCAGATGTACAAGAAGGCCGAGGCGTCGTTC 1915661 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| || ||||||| ||||||| || ||| ||||||| || | | Sbjct 1915660 TGGACGGCCGAGGAAATCGATCTCGGCAAGGACATGGGCGACTGGGAGAACCGGCTCAAC 1915601 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 | ||||| || || || ||| | ||||||||||||||| ||| || || ||| Sbjct 1915600 AACGACGAGCGGTTCTTCATCTCCCACGTGCTGGCCTTCTTTGCCGCCTCGGACGGCATC 1915541 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 |||||||| || ||| || || || || ||| || || |||| |||| Sbjct 1915540 GTCAACGAGAACCTGGTGGAGCGGTTTTCCGGCGAGGTGCAGGCCCCCGAGGCCAAGTGC 1915481 Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 || ||||| ||||| |||||||| |||||| | |||||||||| ||||| ||||| Sbjct 1915480 TTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAAACCTACTCGCTGCTGATC 1915421 Query 125295 GACATGTACATTCGCGATCCGCAACGTAAACACATGC-TCTTTAACGCAATCGACACGGT 125353 |||| ||||| || || ||| | || | | | || ||||| ||||| || | Sbjct 1915420 GACACATACATCAAGGACCC-CAAGGAGCGAACCTACCTGTTCAACGCCATCGAGACCAT 1915362 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413 || | || || ||||| | |||| | | ||||||| |||||| |||| | Sbjct 1915361 TCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAAGTGGATCTCCGACGACGAGTCCAC 1915302 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT 125473 | | ||| |||| | || || |||||||| ||||||||||| || || || || Sbjct 1915301 CTTTGGCGAGCGACTCATTGCCTTTGCCGCCGTGGAGGGCATCTTTTTCTCCGGCTCGTT 1915242 Query 125474 TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGA 125533 ||| ||||||| |||||||||||||| || ||||||||||| ||||| | ||||| Sbjct 1915241 TGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTCTCCAACGA 1915182 Query 125534 GTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT 125592 | | || || ||||||||||| || ||| ||||||||| ||| ||||| ||||| || Sbjct 1915181 GCTCATCTCCCGAGACGAGGGTCTGCACACGGACTTTGCCTGTCTGCTGTTCTCGCACCT 1915122 Query 125593 ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAAC---ATTGTAACCGATG 125649 |||| | | || | | | | ||| || ||||| ||| | Sbjct 1915121 ----------CGAGAACCGGCCCTCCAAGAAGATTGTCGAGGACGTGATTGT---CGAGG 1915075 Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGA 125709 |||| | || || || ||||| || ||||| | || || | | || | ||||||| Sbjct 1915074 CCGTTGGCATCGAGCAGGAGTTCCTGACCGACGCGCTCCCCTGCGGTCTGCTGGGCATGA 1915015 Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 || |||||| |||||| ||||||| ||||||||||| || || || ||| | | Sbjct 1915014 ACGCCAAGCTCATGTGCCAGTACATTGAGTTTGTGGCCGACCGGCTGCTG---GTGGCCC 1914958 Query 125770 TTGG---CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCAC 125826 | || | |||| | |||||| ||| || ||||| || |||||| | ||| || | Sbjct 1914957 TCGGAAACTCCAAGGTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGC 1914898 Query 125827 TAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | | || ||||||||||| ||||||||| Sbjct 1914897 TGGCCGGCAAGACCAACTTCTTCGAGAAG 1914869 >seq5 Length=1963011 Score = 174 bits (192), Expect = 2e-38 Identities = 382/564 (68%), Gaps = 10/564 (2%) Strand=Plus/Plus Query 96820 CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA--TACGTTACACA 96877 |||||||| | ||||| ||||||||| ||| ||| ||| | ||| ||||| || Sbjct 1037242 CCAGTGGCATCGTGCCCATGCTCAGAGTGTTCAA--CAACACCGCGAGGTACGTGGACCA 1037299 Query 96878 GGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGT 96937 ||| || || || || || ||||| | ||| |||| |||| || |||||||| ||| | Sbjct 1037300 GGGTGGGAACAAGCGTCCCGGCGCGTTTGCCATCTATCTGGAGCCGTGGCACGCCGACAT 1037359 Query 96938 TTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTT 96997 | | || ||| || | |||| |||||| ||| |||||| ||||| ||||| | Sbjct 1037360 TCTCGATTTTCTCAATCTGCGGAAAAACCATGGAGCCGAAGAGAACAGAGCCCGGGACCT 1037419 Query 96998 GTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTG 97057 ||| || ||| | |||||||| || ||||||||||||| ||| | || | | || Sbjct 1037420 GTTCTACGCATTGTGGGTGCCCGACCTGTTCATGAAGCGGGTCGAGCGGGGCGAAAAGTG 1037479 Query 97058 GAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGA 97117 | | | || ||| | | | || || ||| || |||||| |||||||| Sbjct 1037480 GTCGTTGTTCTGTCCCAAGAAGGCTCCGGGACTGGAAGACGTGTGGGGCCCCGAGTTTGA 1037539 Query 97118 GGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAG-TCGATGCACGAG 97176 |||||| || |||||| || ||||| ||| | | || || | || | | Sbjct 1037540 ACAAAAGTACGAGGAGTACGAGAAAAGGGGCCTGTAC-AACGCCCAGATCAACGCCCAGG 1037598 Query 97177 AACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACA 97236 | |||| ||||| || ||||| ||| | || || ||| || | ||| || |||| Sbjct 1037599 AGCTGTTCAAGGCGATTCTGACGAGCCAGATCGAAACCGGAGGCCCCTTCATGCTGTACA 1037658 Query 97237 AGGATACCGTGAATCGCAACAG--CAACCAACGCCACTTGGGCACCATCAAGGGCTCCAA 97294 |||| | | || | ||||| || |||||| | || |||| |||||||| ||||| Sbjct 1037659 AGGACAGC-TGCAACGCAA-AGTCCAACCAGCAGAACCTGGGAACCATCAAATCGTCCAA 1037716 Query 97295 TCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGC 97354 |||||||||||||| || ||||| | || ||||| ||| ||| || ||| ||||| Sbjct 1037717 CCTGTGCACGGAAATCGTCCAGTACTCGTCGCCGGAAGAGGTGGCGGTGTGCAACCTGGC 1037776 Query 97355 ATCGGTCAATCTGCCCAAGTTTGT 97378 || || |||||| ||||||| Sbjct 1037777 GTCCGTGGCTCTGCCGGAGTTTGT 1037800 >seq2 Length=2949780 Score = 125 bits (138), Expect = 1e-23 Identities = 366/557 (66%), Gaps = 10/557 (2%) Strand=Plus/Minus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACG 96865 ||| ||||| | | ||| || | ||||| ||||| || ||||||| | | || Sbjct 80302 AACCAACGGAACCTCCAACGGTATCGTGCCCATGCTGCGAGTGTACAACAACACCGCTCG 80243 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| ||||||||||| || || || || || | ||| | ||| |||| || || Sbjct 80242 ATACGTCGACCAGGGCGGCAACAAGCGACCCGGAGCCTTTGCCATGTACCTGGAGCCCTG 80183 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 ||||| ||||| || || || |||| |||| || ||| || || ||| || Sbjct 80182 GCACGACGACGTCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGTAAGGAGGAGATTCG 80123 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 |||| | || |||| || |||||| | || || |||||||| |||| ||| | | Sbjct 80122 AGCCCGAGATCTGTTCCTGGCTCTCTGGATCCCCGACCTGTTCATGGAGCGAGTCGAGCA 80063 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 | | | |||| ||| ||||||||| || || ||||| || || || || Sbjct 80062 GAACGCCGAGTGGACCCTCATGTGCCCCAACGAGTGTCCCGGCCTTGATGACGTCTACGG 80003 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGT 97165 ||| ||||| || |||| | |||||| | ||||||||| | ||||| Sbjct 80002 CGACGAGTTCAAGCAGCTGTACGAGCAGTACGAGAAGGAGGGCCGA---GGCCGACGA-A 79947 Query 97166 CGATGCACG---AGAA-CTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | || | || |||| |||||| | || || ||| | |||| ||| | || | Sbjct 79946 CCATCCCCGCCCAGAAGCTGTGGTACCACATTCTGGACTG-TCAGACCGAGTCCGGCAAC 79888 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | ||| ||||||||||| || || || || |||||| || |||| || Sbjct 79887 CCCTTCATGCTCTACAAGGACTCCTGCAACCGAAAGTCCAACCAGAAGAACCTGGGTACT 79828 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340 |||||| ||||| |||||| || ||||| |||||| | ||||| |||||| ||| Sbjct 79827 ATCAAGTCGTCCAACCTGTGCTGCGAGATTGTCGAGTACTCGTCTCCTGACGAGGTGGCC 79768 Query 97341 GTTTGCGTTCTGGCATC 97357 || ||| ||||| || Sbjct 79767 GTCTGCAACCTGGCCTC 79751 >seq6 Length=1650383 Score = 122 bits (134), Expect = 1e-22 Identities = 384/589 (65%), Gaps = 21/589 (4%) Strand=Plus/Plus Query 69885 ACAACAACCTACCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGC 69944 || ||| || |||||| | || || ||| ||||| | ||||| | || |||| Sbjct 1314522 ACGACATTCTTCCTCTGCTCACCACAAAGCGGGTCTTCTACCGAGGCGTTTTGGAAGAGC 1314581 Query 69945 TCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACACA 70004 | ||||| | | |||||| ||| | | ||| |||||||| |||| | |||| Sbjct 1314582 TGCTGTGGTTTGTGGCCGGATGTACCGACGGCAAGAAGCTGAGCGAAAAGAACATTCACA 1314641 Query 70005 TTTGGAGCGGCAACAGTAGTCGAAGCGTTT-TGGATTCG-CTCGGCTTCACCGACAGACA 70062 | ||| ||| ||| | | | | | |||| |||| | || | || | |||||| Sbjct 1314642 TCTGGGACGGAAACGG-ATCCAAGGAGTTTCTGGAGAAGGCTGGACTGGGAC-ACAGACG 1314699 Query 70063 AGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGT 70122 ||||| || ||||| || ||||| || ||||| ||| | || | || || |||| Sbjct 1314700 TGAGGGAGACCTGGGACCCGTGTATGGCTTCCAATGGCGTCATTTTGGAGCCGAGTACAA 1314759 Query 70123 AGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACAC 70182 ||||||||| |||||||| || ||||| || ||||| | || | ||| |||| Sbjct 1314760 AGACTGCGACACAGACTACAGTGGCCAGGGCGTGGATCAGCTCAAGCAGGTGATTCACAC 1314819 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTT 70242 |||||||||||| || || | | ||| | ||| ||||||| ||||| ||| | Sbjct 1314820 TCTCAAGACCAACCCCCAGGACCGACGAATCATTCTGTCTGCATGGAACCCTGCCGATCT 1314879 Query 70243 GCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTA---CTCGTACGA-- 70296 | | | ||||| || || || |||||| |||| || ||||| || |||||| | Sbjct 1314880 GTCCAAGATGGCTCTGCCTCCCTGTCACATGTTCTGC-CAGTTCTATGTGTCGTACAAGA 1314938 Query 70297 ----------TGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCG 70346 ||| |||| ||| |||| ||| || || |||| || | Sbjct 1314939 ACTCGGAGCGGGGCCGGCTGTCGTGCCAGCTGTACCAGCGGTCCTGTGATCTGGGTCTGG 1314998 Query 70347 GTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCG 70406 |||| ||||| |||||||| || || ||||||| | |||||||| || | |||| Sbjct 1314999 GTGTCCCCTTCAACATTGCCTCTTACGCTCTGTTGACTCGAATGATTGCCCAGGTGACCG 1315058 Query 70407 GCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTA 70455 ||| | |||| || | ||||| || || |||||||||||||| Sbjct 1315059 ATCTGGACTGTGGCGAGCTCATCCACACTATGGGAGACGCTCACGTGTA 1315107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058838733640