Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2 145 1e-30 seq6 132 8e-27 >seq2 Length=2949780 Score = 145 bits (160), Expect = 1e-30 Identities = 195/269 (72%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | ||| | | ||||||||||| || || ||||||||||| |||| Sbjct 701744 CGCTAAGCGACACCGAAAGATTT-TGCGAGATAACATTCAGGGTATCACCAAGCCCGCTA 701802 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || || || ||||| || ||||| | || | | |||| || |||| Sbjct 701803 TCCGACGTCTTGCACGACGAGGTGGTGTGAAGCGAATTTCCGCCCAGATCTACGAGGAGA 701862 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| ||||||| || | || |||| ||||| | ||| || | Sbjct 701863 CCCGAAACGTTCTCAAGTCCTTCCTCGAGTCTGTCATCCGAGATGCCGTGACCTACACTG 701922 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||||||||| || | ||| ||||||| || | || || || | Sbjct 701923 AGCACGCCAAGCGAAAGACTGTCACTTCTCTCGATGTCGTCTACGCCCTCAAGCGACAGG 701982 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | |||| ||||| || ||||| Sbjct 701983 GCCGAACCCTTTACGGTTTCGGTGGTTAA 702011 >seq6 Length=1650383 Score = 132 bits (146), Expect = 8e-27 Identities = 193/270 (71%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | ||| ||||||||||||||| || || ||||| ||||| || | Sbjct 1359964 CGCTAAGCGACACCGAAAGAT-TCTTCGAGATAACATTCAGGGTATCACTAAGCCCGCCA 1360022 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || || || ||||| || ||||| | || | | |||| || |||| Sbjct 1360023 TCCGACGTCTTGCGCGACGAGGTGGTGTGAAGCGAATTTCCGCCCAGATCTACGAGGAGA 1360082 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||| || |||| |||| ||||| | ||| |||| Sbjct 1360083 CCCGAAACGTGCTCAAGTCGTTCCTGGAGTCCGTCATCCGAGATGCCGTGACCTACACCG 1360142 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| || |||| | ||||| || | || || || | Sbjct 1360143 AGCACGCCAAGCGAAAGACCGTCACTTCTCTGGACGTTGTCTACGCTCTCAAGCGACAGG 1360202 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | |||| ||||| || |||||| Sbjct 1360203 GCCGAACCCTTTACGGTTTCGGTGGTTAAT 1360232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075164342027