Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7 127 2e-24 seq5 105 6e-18 seq2 104 2e-17 >seq7 Length=1109975 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | |||||||| || |||| ||||| ||||| | || Sbjct 1062556 ATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 1062615 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||| ||||| || || || Sbjct 1062616 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 1062675 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || ||||| || ||| | ||||| ||| ||| | || || |||||| Sbjct 1062676 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAAC 1062735 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | ||| | ||| ||||| | || || ||| Sbjct 1062736 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGTGGT 1062783 >seq5 Length=1963011 Score = 105 bits (116), Expect = 6e-18 Identities = 324/489 (66%), Gaps = 29/489 (6%) Strand=Plus/Minus Query 129738 GTACTCGACAATTTCGGCGCACAAATT--ACTATTTTTAATGGTGCCCAAATGCTTTTGA 129795 ||||| ||| ||||| | ||||| || || |||| ||||| |||| | || || Sbjct 1037741 GTACTGGACGATTTCCGTGCACAGGTTGGACGATTTG--ATGGTTCCCAGGTTCTGCTGG 1037684 Query 129796 TT--ACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGA-CT 129852 || ||||| | |||||| || ||||||| |||| | || || ||||||| || Sbjct 1037683 TTGGACTTTGC--GTTGCAGCTGTCCTTGTACAGCATGAAGGGGCCTCCGGTTTCGATCT 1037626 Query 129853 TGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTG----TCTTACAAATTT 129908 || || | ||| | | |||||| || | || |||||||| | |||| Sbjct 1037625 GGCTCGTC-AGAATCGCCTTGAACAGCTCCTGGGCGTTGATCTGGGCGTTGTACAG---- 1037571 Query 129909 GCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAG 129968 ||| | ||||||||| || | ||| ||||||||| || | ||| ||| || || Sbjct 1037570 GCCCCTTTTCTCGTACTCCTCGTACTTTTGTTCAAACTCGGGGCCCCACACGTCTTCCAG 1037511 Query 129969 CAACGGCGA-TTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCA 130027 ||| | ||| | ||||| | ||| |||| || | || ||||| || |||| Sbjct 1037510 TCCCGGAGCCTTCTTG-GGACAGAACAACGACCACTTTTCGCCCCGCTCGACCCGCTTCA 1037452 Query 130028 TAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCAC 130087 | |||| ||||| ||||||| ||||| |||| || || ||| | | || ||||| | Sbjct 1037451 TGAACAGGTCGGGCACCCACAATGCGTAGAACAGGTCCCGGGCTCTGTTCTCTTCGGCTC 1037392 Query 130088 CCATGTTACGTTTC---AGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACAT 130144 | ||| |||| || | || |||||| |||||||||||||||||| || | || Sbjct 1037391 CATGGTT---TTTCCGCAGATTGAGAAAATCGAGAATGTCGGCGTGCCACGGCTCCAGAT 1037335 Query 130145 AAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGT 130201 | || || | ||||| || ||| || || ||||| |||| | | ||| |||| Sbjct 1037334 AGATGGCAAACGCGCCGGGACGCTTGTTCCCACCCTGGTCCACGTACCTCGCGGTGTTGT 1037275 Query 130202 TGTAGACTC 130210 || | |||| Sbjct 1037274 TGAACACTC 1037266 >seq2 Length=2949780 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 ||||||| ||||| || || | || || || || |||| || || ||||| | ||| Sbjct 2456518 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCG 2456577 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | ||| | ||| | |||| || || || ||||||||||| ||||| || || || | Sbjct 2456578 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGC 2456637 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 | || || || || |||||||| ||| | ||||| ||| || | || || ||||||| Sbjct 2456638 AGCGACTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAACA 2456697 Query 22400 TTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | || || || ||||| | || | ||| |||| | || |||||| Sbjct 2456698 TCCAGAAGGAGTCCACTCTGCACCTGGTTCTGCGTCTCCGAGGAGGT 2456744 Score = 86.0 bits (94), Expect = 5e-12 Identities = 256/392 (65%), Gaps = 5/392 (1%) Strand=Plus/Plus Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTT 130074 |||||||| | ||| |||| ||||| | ||| || || |||| |||||| ||| Sbjct 80066 TCGACTCGCTCCATGAACAGGTCGGGGATCCAGAGAGCCAGGAACAGATCTCGGGCTCGA 80125 Query 130075 CTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCAC 130134 | ||||| ||| ||| | ||| || ||| ||| | | |||| ||||||| Sbjct 80126 ATCTCCTCCTTACCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGACGTCGTCGTGCCAG 80185 Query 130135 GGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGC 130191 || || | || || || | || || || ||| || || ||||| |||| || Sbjct 80186 GGCTCCAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCGCCCTGGTCGACGTATCGA 80245 Query 130192 ACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTC 130251 ||| |||||||| ||||||| ||| | | | | ||||||| || ||||| || | Sbjct 80246 GCGGTGTTGTTGTACACTCGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTGGTTCCA 80305 Query 130252 TCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAAT 130311 | ||| | ||| ||| || | ||| || | | ||||| ||||| || | | Sbjct 80306 GCGATGTAGGAGCCGGTAGCTCGGATGTTGTGGATGGACAGACCAATGCCTCCAGCGGAC 80365 Query 130312 TTTGATATCAACGCGCAA-TCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTT 130370 || || || | || ||| || | || || || || ||||| |||| ||| || || Sbjct 80366 TTGGAAATGAGAGCACAAGTCTTG-AGAGTGTCGTAGATGCCGTCGATGGAGTCGTCCTT 80424 Query 130371 AATGTTTAGGAGGAAACACGAGGCCAATTGGG 130402 ||||| | |||||||||||| | || |||| Sbjct 80425 CATGTTGACGAGGAAACACGACGACATCTGGG 80456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727800498035