Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016-
03-01] 39 sequences; 21,750,525 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq7 127 2e-24
seq5 105 6e-18
seq2 104 2e-17
>seq7
Length=1109975
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| |||||||| || || | |||||||| || |||| ||||| ||||| | ||
Sbjct 1062556 ATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 1062615
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || || || ||||||||||| ||||| || || ||
Sbjct 1062616 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 1062675
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || ||||| || ||||| || ||| | ||||| ||| ||| | || || ||||||
Sbjct 1062676 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAAC 1062735
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || ||||| | ||| | ||| ||||| | || || |||
Sbjct 1062736 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGTGGT 1062783
>seq5
Length=1963011
Score = 105 bits (116), Expect = 6e-18
Identities = 324/489 (66%), Gaps = 29/489 (6%)
Strand=Plus/Minus
Query 129738 GTACTCGACAATTTCGGCGCACAAATT--ACTATTTTTAATGGTGCCCAAATGCTTTTGA 129795
||||| ||| ||||| | ||||| || || |||| ||||| |||| | || ||
Sbjct 1037741 GTACTGGACGATTTCCGTGCACAGGTTGGACGATTTG--ATGGTTCCCAGGTTCTGCTGG 1037684
Query 129796 TT--ACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGA-CT 129852
|| ||||| | |||||| || ||||||| |||| | || || ||||||| ||
Sbjct 1037683 TTGGACTTTGC--GTTGCAGCTGTCCTTGTACAGCATGAAGGGGCCTCCGGTTTCGATCT 1037626
Query 129853 TGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTG----TCTTACAAATTT 129908
|| || | ||| | | |||||| || | || |||||||| | ||||
Sbjct 1037625 GGCTCGTC-AGAATCGCCTTGAACAGCTCCTGGGCGTTGATCTGGGCGTTGTACAG---- 1037571
Query 129909 GCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAG 129968
||| | ||||||||| || | ||| ||||||||| || | ||| ||| || ||
Sbjct 1037570 GCCCCTTTTCTCGTACTCCTCGTACTTTTGTTCAAACTCGGGGCCCCACACGTCTTCCAG 1037511
Query 129969 CAACGGCGA-TTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCA 130027
||| | ||| | ||||| | ||| |||| || | || ||||| || ||||
Sbjct 1037510 TCCCGGAGCCTTCTTG-GGACAGAACAACGACCACTTTTCGCCCCGCTCGACCCGCTTCA 1037452
Query 130028 TAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCAC 130087
| |||| ||||| ||||||| ||||| |||| || || ||| | | || ||||| |
Sbjct 1037451 TGAACAGGTCGGGCACCCACAATGCGTAGAACAGGTCCCGGGCTCTGTTCTCTTCGGCTC 1037392
Query 130088 CCATGTTACGTTTC---AGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACAT 130144
| ||| |||| || | || |||||| |||||||||||||||||| || | ||
Sbjct 1037391 CATGGTT---TTTCCGCAGATTGAGAAAATCGAGAATGTCGGCGTGCCACGGCTCCAGAT 1037335
Query 130145 AAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGT 130201
| || || | ||||| || ||| || || ||||| |||| | | ||| ||||
Sbjct 1037334 AGATGGCAAACGCGCCGGGACGCTTGTTCCCACCCTGGTCCACGTACCTCGCGGTGTTGT 1037275
Query 130202 TGTAGACTC 130210
|| | ||||
Sbjct 1037274 TGAACACTC 1037266
>seq2
Length=2949780
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279
||||||| ||||| || || | || || || || |||| || || ||||| | |||
Sbjct 2456518 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCG 2456577
Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339
| ||| | ||| | |||| || || || ||||||||||| ||||| || || || |
Sbjct 2456578 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGC 2456637
Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399
| || || || || |||||||| ||| | ||||| ||| || | || || |||||||
Sbjct 2456638 AGCGACTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAACA 2456697
Query 22400 TTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
| || || || ||||| | || | ||| |||| | || ||||||
Sbjct 2456698 TCCAGAAGGAGTCCACTCTGCACCTGGTTCTGCGTCTCCGAGGAGGT 2456744
Score = 86.0 bits (94), Expect = 5e-12
Identities = 256/392 (65%), Gaps = 5/392 (1%)
Strand=Plus/Plus
Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTT 130074
|||||||| | ||| |||| ||||| | ||| || || |||| |||||| |||
Sbjct 80066 TCGACTCGCTCCATGAACAGGTCGGGGATCCAGAGAGCCAGGAACAGATCTCGGGCTCGA 80125
Query 130075 CTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCAC 130134
| ||||| ||| ||| | ||| || ||| ||| | | |||| |||||||
Sbjct 80126 ATCTCCTCCTTACCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGACGTCGTCGTGCCAG 80185
Query 130135 GGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGC 130191
|| || | || || || | || || || ||| || || ||||| |||| ||
Sbjct 80186 GGCTCCAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCGCCCTGGTCGACGTATCGA 80245
Query 130192 ACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTC 130251
||| |||||||| ||||||| ||| | | | | ||||||| || ||||| || |
Sbjct 80246 GCGGTGTTGTTGTACACTCGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTGGTTCCA 80305
Query 130252 TCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAAT 130311
| ||| | ||| ||| || | ||| || | | ||||| ||||| || | |
Sbjct 80306 GCGATGTAGGAGCCGGTAGCTCGGATGTTGTGGATGGACAGACCAATGCCTCCAGCGGAC 80365
Query 130312 TTTGATATCAACGCGCAA-TCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTT 130370
|| || || | || ||| || | || || || || ||||| |||| ||| || ||
Sbjct 80366 TTGGAAATGAGAGCACAAGTCTTG-AGAGTGTCGTAGATGCCGTCGATGGAGTCGTCCTT 80424
Query 130371 AATGTTTAGGAGGAAACACGAGGCCAATTGGG 130402
||||| | |||||||||||| | || ||||
Sbjct 80425 CATGTTGACGAGGAAACACGACGACATCTGGG 80456
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727800498035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |