Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 179 8e-40 seq1 147 4e-30 seq2 105 1e-17 seq9 84.2 4e-11 >seq3 Length=2682169 Score = 179 bits (198), Expect = 8e-40 Identities = 560/856 (65%), Gaps = 16/856 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| |||| ||||| ||||||||||||||||||||| ||| Sbjct 1914873 TCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 1914932 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || || || | | ||||| ||||||||||| | Sbjct 1914933 GAGTTGTAGACCTTGGAGTTTCCGAGGGCCACCAGCAGCCGGTCGGCCACAAACTCAATG 1914992 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || | | ||||||||| | || || || || | || || | | Sbjct 1914993 TACTGGCACATGAGCTTGGCGTTCATGCCCAGCAGACCGCAGGGGAGCGCGTCGGTCAGG 1915052 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC-CTGTGCCAGAGACAG 251801 || |||| ||| || |||| ||||| | | | ||| || | | | | || | Sbjct 1915053 AACTCCTGCTCGATGCCAACGGCCTCGACAATCACGTCCTCGACAATCTTCTTG-GAGGG 1915111 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 | |||||| || | ||| |||| || | |||| | ||||||||||||||| || Sbjct 1915112 CCGGTTCTCGAGGTGCGAGAACAGCAGACAGGCAAAGTCCGTGTGCAGACCCTCGTCTCG 1915171 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 ||||| ||||||||| | |||||| ||||| | || || ||| |||||||||| Sbjct 1915172 GGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAA 1915231 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 ||| | | ||| || || ||||| | | ||||| || | | |||| || || Sbjct 1915232 GATGGAGGCAAACGAGCCGGAGAAAAAGATGCCCTCCACGGCGGCAAAGGCAATGAGTCG 1915291 Query 251982 CTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTTTCC 252038 ||| |||| |||| ||| | || | |||| | ||||| | |||||||| Sbjct 1915292 CTCGCCAAAGGTGGACTCGTCGTCGGAGATCCACTTGAGCGCCCAGTCGGCCTTCTTCTT 1915351 Query 252039 AACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGAT 252098 | ||| || || ||||| || | || || || | ||||| ||||| ||| Sbjct 1915352 GATGCAGGGAATGGTCTCGATGGCGTTGAACAGGTAGGTTCGCTCCTTGGGGTCCTTGAT 1915411 Query 252099 GAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTA 252158 | | || | ||| || ||||| | ||||| |||||| || | | |||||| | Sbjct 1915412 GTATGTGTCGATCAGCAGCGAGTAGGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAA 1915471 Query 252159 AGCATAGAA----TAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAA 252214 | ||||| | | | | ||| ||| | | || || |||||| | | | Sbjct 1915472 GCCGTAGAAGCACTTGGC-CTCGG--GGGCCTG-CACCTCGCCGGAAAACCGCTCCACCA 1915527 Query 252215 TGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGT 252274 |||||| | || ||||| || | | ||||||||| | || | | ||||||| Sbjct 1915528 GGTTCTCGTTGACGATGCCGTCCGAGGCGGCAAAGAAGGCCAGCACGTGGGAGATGAAGA 1915587 Query 252275 GACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACTT 252334 ||||| |||| ||||||| || ||||||| | ||||||| ||| | || Sbjct 1915588 ACCGCTCGTCGTTGTTGAGCCGGTTCTCCCAGTCGCCCATGTCCTTGCCGAGATCGATTT 1915647 Query 252335 CTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGGTAC 252393 | || |||||||||| | | | | |||||||||||||| ||| | | || ||||| Sbjct 1915648 CCTCGGCCGTCCAGAACGACGCCTCGGCCTTCTTGTACATCTGC-CAGATCTCGTGGTAC 1915706 Query 252394 TTGATTGGGAA-AGCA 252408 | ||| ||||| |||| Sbjct 1915707 TGGATGGGGAAGAGCA 1915722 >seq1 Length=4810746 Score = 147 bits (162), Expect = 4e-30 Identities = 421/631 (67%), Gaps = 25/631 (4%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || |||||||||||| ||||||| ||||| || || || |||| ||||||||||| ||| Sbjct 2137034 GGAGAGGATCTGTGTAACTGTGAGTTCTCTCTGGCTTACGGTGCCAAGATTCTGCTGAAC 2137093 Query 279405 TCTACCC-GCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 |||| || || || | ||||| ||| || || |||||| || ||||| || || Sbjct 2137094 CGAACCCAGCTTCGACTT-AAGCGAGGCCGACGATACGGTCTCTGTGGCCCCAACGGTGC 2137152 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGC 279523 |||||| ||| || ||||| |||||||| ||||| ||| | || || ||||| || | Sbjct 2137153 TGGTAAGTCCACCCTGATGCGAGCCATTGCCAACGGCCAGGTCGAGGG-TTTCCCCACCC 2137211 Query 279524 ATCTGAGGTAAGGA-CAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCA 279582 | | || || | || | || || |||||||| ||| | | | | || | || Sbjct 2137212 AGGAGGAGTGTCGAACTGTCTTCGTCGACCACGACATTGACGGTACCCACGCCGACACCA 2137271 Query 279583 CTGTGTTCGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAA 279642 || | |||| ||||| || | | | || | || | | ||||||| Sbjct 2137272 ACGTTGTTGACT-----ACGTCCGAAAGACCGCCGGTG-AGTCCATCGGTACTGAGGAGG 2137325 Query 279643 TCATCCAGAAACTGGAGGC-CAA--TGGTTTTGATGAAAGA-ATG--CGTAATCTGCCAG 279696 ||| ||| | | || | | | | || | | || ||| | ||| ||| Sbjct 2137326 AGGTCC-GAACCCAGCTGCTCGACTTCCTGTTCACCGACGAGATGACCCGAAT--GCCCA 2137382 Query 279697 TAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGC 279756 | |||||||| ||||| ||||||||||||||||| || | |||| | || | Sbjct 2137383 TCACCTCTCTGTCTGGTGGATGGAAGATGAAGCTGGCTCTTGCCACCGCCGTCCTCCGAA 2137442 Query 279757 GTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCT 279816 |||||| |||| |||||||||||||| |||||||| |||| ||| |||||| || | Sbjct 2137443 AGGCCGATATCCTGCTGCTTGATGAGCCTACCAACCATCTGGATACCGTCAACGTTGCTT 2137502 Query 279817 GGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACT 279876 |||| || |||||| | || ||| | | || | ||| |||| ||||| ||||||| Sbjct 2137503 GGCTGGTCAACTACCTCAACA-CCTGTGG--TATTACCTCCATCATCGTCTCCCACGACT 2137559 Query 279877 CTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCT 279936 |||| ||||| || ||| || ||| || ||||| |||| | | |||||| Sbjct 2137560 CTGGTTTCCTCGACAACGTCTGTGAGTACATTATCCACTACGAGCGA---TTCAAGCTCC 2137616 Query 279937 CCAAGCACATCGGCAACCTGTCTGCTTTCGT 279967 ||| ||| || ||||| || | ||||| Sbjct 2137617 GAAAGTACAAGGGTAACCTCTCCGAGTTCGT 2137647 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 280677 CTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAG 280736 || ||||| || |||||| || ||||||| || || || ||||| ||||| || ||| Sbjct 2138405 CTTGGTCTCGAGCCCGAGCTTGTCTCTCACTCCCGAATCCGAGGTCTGTCTGGTGGACAG 2138464 Query 280737 AAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGAC 280796 |||||||| || || | | || | ||||| | || || |||||||||| || Sbjct 2138465 AAGGTCAAGCTGGTGCTTGCCGCCTGTACCTGGCAGCGACCCCATCTGATCGTTCTTGAT 2138524 Query 280797 GAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 |||||||||||||||||||| || || || || |||||| Sbjct 2138525 GAGCCTACCAACTATCTGGATCGAGACTCTCTTGGAGCTCTG 2138566 >seq2 Length=2949780 Score = 105 bits (116), Expect = 1e-17 Identities = 411/637 (65%), Gaps = 13/637 (2%) Strand=Plus/Plus Query 293140 CGATCAGCAGCGAGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACT 293199 || |||||||| | || || | | |||| || ||||||||| |||||||||| Sbjct 78992 CGGTCAGCAGCCATCTCGATGATTCGCTTCTGCGAAATCTCCCACACGGTCTTGTACAGG 79051 Query 293200 GCCTTGACATCAGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATC 293259 |||||| || | | ||| | ||||| | || || || ||| | || Sbjct 79052 TCCTTGATCTCCTGGGGGATGTTGGGGATGTTCTGCACGGATCCGTTGTCGGCCACGATT 79111 Query 293260 TGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGA 293318 |||||||||| ||||| ||| ||||| || ||| || || || || | | Sbjct 79112 CGGTTCTTCATGGTCTCATTCCACAGTCCGACCT-CAACCAGGTCCTTGAGCAGCCAGGG 79170 Query 293319 GTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGG 293378 |||||||| ||||||| ||||| || || || ||||||||| || ||| ||| Sbjct 79171 GTTGACAATCTGGAACTCGCCAGCAAGCACTCGTCGAGAGTAAATGTTGGAGGTGTAGGG 79230 Query 293379 TTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCATAAGAGCAGT 293438 ||| ||| | ||| |||||| | || || ||||| ||||| | || Sbjct 79231 CTCGAAACACTCGTTGAAGCCGAGAATCTGCGAGGTGGAGGCGGTGGGCATGGGGGCCAC 79290 Query 293439 CGTCAGAGAGTTCCTCACACC---CTTCTTGACACGCGATTCGAGACCCGCCCAGTCC-A 293494 | ||| ||||| | || || |||| ||| | | |||| | |||| ||| | Sbjct 79291 CAGCAGCGAGTTTCGCATTCCGGTCTTCATGATCTTGGCCTTGAGATCGTCCCACTCCCA 79350 Query 293495 GAGCAGTCTGAGGT-GTAACACCCCAGAGATGATACTGCATGATACCCTTGCTGGCAGGA 293553 |||| || |||| || || ||| |||| | |||||| | ||||||| ||||||| Sbjct 79351 GAGC--TCGGAGGGAGTCACGTTCCACAGATCAAACTGCAGGTCACCCTTGGAGGCAGGA 79408 Query 293554 GACCCCTCAAAGGTGGGATGGGGGCCATGCTCATCAGAGAGCTCGCAAGATGCCTCAACA 293613 || |||| ||||| | || ||| | |||| | | |||| | || |||||||| Sbjct 79409 GAGCCCTGGAAGGTCTCGTAGGCGCCGTCCTCAAGGGCCATCTCGTAGGAGGCCTCAACG 79468 Query 293614 GCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTGAGCTTGCGAGCCTGCTCAGAGTCA 293673 || | ||| ||| ||||||||||| ||||||||| |||| ||| || ||| Sbjct 79469 GCTCCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCCTCGGACTCA 79528 Query 293674 AACGGCATCTTCAGCTGG--AAGAACACATCCTGCAGACCCTGTACACCTACACCAACGG 293731 || || | || | || | ||| || ||||||||| ||||| | | ||| || Sbjct 79529 AAGGGAA--GTCGGAGGGCCATGAAAGTGTCAGCCAGACCCTGGACACCCAGAGCAATGG 79586 Query 293732 GGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAAC 293768 | || | ||| ||||| | ||| |||||||| || Sbjct 79587 GTCGGTGTCGCATGTTGGACTTCTTGGCCTCGGGGAC 79623 >seq9 Length=923155 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 |||||||| || || ||||||||||||||||| ||| |||||| ||| ||| | || Sbjct 620419 TGCACTCTGATTCTCACAGAGGGAGACTCAGCCATGACGATGGCAAACGCCGGTTTGGCG 620360 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 ||| | || || || || || || || || || || |||||| |||| |||||||| Sbjct 620359 GTGATTGGCCGAGAGAGATACGGCGCTTTTCCGCTGCGAGGTAAGATGCTGAACGTGCGA 620300 Query 217957 GATGCCTCG 217965 || || ||| Sbjct 620299 GAAGCGTCG 620291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836286402799