Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3 246 6e-60 seq2 168 1e-36 seq7 154 3e-32 seq1 127 4e-24 >seq3 Length=2682169 Score = 246 bits (272), Expect = 6e-60 Identities = 598/891 (67%), Gaps = 21/891 (2%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || ||||| |||||||||||||| |||||| | Sbjct 1914836 CATGACACCGGCCTTCTGGTAGTCGGACACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 1914895 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||||||||| |||||||| || | | ||||| || || Sbjct 1914896 CAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGAGTTTCC 1914955 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || | | ||||| ||||| ||||| |||||||||| ||| || | | ||| Sbjct 1914956 GAGGGCCACCAGCAGCCGGTCGGCCACAAACTCAATGTACTGGCACATGAGCTTGGCGTT 1915015 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | || | |||||||| |||||| | ||| |||| ||| || | || | Sbjct 1915016 CATGCCCAGCAGACCGCAGGGGAGCGCGTCGGTCAGGAACTCCTGCTCGATGCCAACGG- 1915074 Query 10175 TTCCTCGACGATGCTCTTTACCACGTCAA------GGGACAGCTTGTTCTCGAGCTTCGA 10228 ||||||| || | | | || || ||| ||| || ||||||||| | ||| Sbjct 1915075 --CCTCGACAAT-CACGT--CCTCGACAATCTTCTTGGAGGGCCGGTTCTCGAGGTGCGA 1915129 Query 10229 ATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGA 10288 |||| || |||| | | ||| || |||||||| ||| ||||| ||||||||| Sbjct 1915130 GAACAGCAGACAGGCAAAGTCCGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGA 1915189 Query 10289 CAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCC 10348 || ||| ||||||||||| || || || |||||||| |||| | ||||| || Sbjct 1915190 GAAGGTCAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCC 1915249 Query 10349 GGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTC 10408 |||||| | | ||||||||| | |||| | ||| ||||| | |||| | || Sbjct 1915250 GGAGAAAAAGATGCCCTCCACGGCGGCAAAGGCAATGAGTCGCTCGCCAAAGGTGGACTC 1915309 Query 10409 G-CG-CGAAAAGTATTTCGAG-GCCCACGCTGCCTTCTTTCCCACGGCAGGG-ATCGTCT 10464 | || || | | | ||| ||||| | |||||| ||| |||||| || |||| Sbjct 1915310 GTCGTCGGAGATCCACTTGAGCGCCCAGTCGGCCTTC-TTCTTGATGCAGGGAATGGTCT 1915368 Query 10465 CGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCA 10524 |||| || | ||| || | | | ||||| | ||||| || | || | |||| Sbjct 1915369 CGATGGCGTTGAACAGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCA 1915428 Query 10525 GGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGT 10583 | ||||| || ||||| | |||| | |||| | ||||||| || | Sbjct 1915429 GCGAGTAGGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTG- 1915487 Query 10584 GCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCA 10643 ||| |||| || || || ||| ||| | ||||||||| | || ||||| Sbjct 1915488 GCCTCGGGGGCCTGCACCTCGCCGGAAAACCGCTCCACCAGGTTCTCGTTGACGATGCCG 1915547 Query 10644 TCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAG- 10702 || | | ||||||||| | || | ||| ||||||| ||||| || | ||| || Sbjct 1915548 TCCGAGGCGGCAAAGAAGGCCAGCACGTGGGAGATGAAGAACCGCTCGTCGTTGTTGAGC 1915607 Query 10703 TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGT 10762 ||| | |||||| ||| |||| | ||| | || ||||| | |||||||| | Sbjct 1915608 CGGTTCTC-CCAGTCGCCCATGTCCTTGCCGAGATCGATTTCCTCGGCCGTCCAGAACGA 1915666 Query 10763 GGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813 || ||||||||||||||||||| | || ||| ||||| |||||||||| Sbjct 1915667 CGCCTCGGCCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAA 1915717 Score = 138 bits (152), Expect = 2e-27 Identities = 445/675 (66%), Gaps = 32/675 (5%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| | |||||||||||| ||| | ||| ||| | ||| | || || | Sbjct 2006245 TATCGCCACTGCAGGTACTGGTTGGGCGTCTTTTCCTTGTGCTGCTCCACGTGCTGCAGC 2006186 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || |||||||| | ||| | || |||| |||||| |||||| ||| |||| || Sbjct 2006185 GCGTGCTGGGCAATGTATCCGATTCGCAGGTTGGGGTGCTTCTCCACCTTGCCCTCGGTG 2006126 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || | |||||||| || |||||||| ||||| | ||| || || || ||||| || Sbjct 2006125 GGCACGACTTCGCCGGTCAGCACCTTGATCAGCGTCGACTTTCCAGCTCCGTTGGGTCCC 2006066 Query 225158 ATCACGCCAATCCGGGATGACATTG-CAACCTGCGAGTTCACGTTGCTGAAGA----TCT 225212 | || | | || || ||||| | || | | || |||| || |||| || Sbjct 2006065 AGAACAGCGACTCGAGACGACATGGACAGCGAACAAG-AGGCGTT-CTTAAGAGACGGCT 2006008 Query 225213 CAGGGCCAGTTTGGTAAGCAAAGGCCACG----CCACGCAGCTTCATGATGGCACGGTCC 225268 ||| | | |||| | |||| || |||| | | || ||||| ||| Sbjct 2006007 TGGGGGCGTTGGGGTAGGTGAAGGAGGCGTCGACCACTCGG--GCA--ATGGCTCGGGTG 2005952 Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTT--GGTCACCGCGT 225326 ||||| | || ||| | ||||| ||||| || ||| ||| | || Sbjct 2005951 TTGGATCGCACTCCGGACAGAATGCCGGGAGGAGGGAAGGCCATCTTCAGGT--TGGAGT 2005894 Query 225327 CCTTCAGGTCGTAGTAAG--ATGCAGCCTCGGGTCG--CTTTGCCACGAAAGCAGACAGG 225382 | ||||| |||||||| ||| |||||||||| | ||| || || | | |||| Sbjct 2005893 CGGTCAGGGTGTAGTAAGCCTTGC--CCTCGGGTCGCACCTTG--ACAAAGTCGGCCAGG 2005838 Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACT 225442 || || || | ||||| || |||||||| || |||| | | |||||| Sbjct 2005837 TTGCCCTTGTAGTAGACCAGCTT---CTTGTTCTCGTAGTGCGCAATGTCGGTGCACACG 2005781 Query 225443 GCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTG 225502 ||||| |||||||| |||||||| || ||||| | || | | || ||| || || Sbjct 2005780 GCGTCGAGGAAGCCGGAGTCGTGTGAAACAATCAGCGAGGTGATGTCCGTGTGGGCCACC 2005721 Query 225503 AGGTGCGTGATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAG 225561 |||| || || ||||| ||||||| ||||||| ||||| ||||| |||||||| Sbjct 2005720 AGGT-AGTCCTGCAGCCACTTGACGTTGCCCACGTCCAGATGGTTAGTAGGCTCGTCCAG 2005662 Query 225562 AAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCC 225621 ||||| ||||| || | ||||| ||||| || | || ||||||||| ||||| || Sbjct 2005661 CAGCAGAATGTCGGCCTTCATGAGCATGGCTCGGGCCAGCTCCAGCTTCATCTTCCATCC 2005602 Query 225622 CCCGGACAGGGAGCC 225636 || ||||| | ||| Sbjct 2005601 TCCAGACAGAGCGCC 2005587 >seq2 Length=2949780 Score = 168 bits (186), Expect = 1e-36 Identities = 173/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || |||| |||| ||| || |||||||| || |||||||| || || || Sbjct 2456743 CCTCCTCGGAGACGCAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 2456684 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||||| || ||||| || ||| Sbjct 2456683 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCCGGGGGA 2456624 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| || |||||||| | || || || Sbjct 2456623 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 2456564 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460 || | ||||||||| || || || ||||||||||| || || |||| Sbjct 2456563 TCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 2456518 >seq7 Length=1109975 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | || || |||||||| || |||||||| || || || Sbjct 1062782 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1062723 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || |||| || ||||| || ||| Sbjct 1062722 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1062663 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 1062662 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1062603 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||| || || || || ||||||||||| || ||||||||| Sbjct 1062602 TCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATT 1062555 >seq1 Length=4810746 Score = 127 bits (140), Expect = 4e-24 Identities = 472/729 (65%), Gaps = 17/729 (2%) Strand=Plus/Minus Query 225280 ACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCAGGTCGTA 225339 |||||| ||||| |||||||||||||| | ||| || | | | | ||| ||||| Sbjct 2137735 ACCCTCAAGGAAACCGGGCTCGGGGAAAGAGAAGTTGATCTCGGAGGCACCCAGCTCGTA 2137676 Query 225340 GTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGTGCTTCGT 225399 |||||| || || ||| ||||| | || ||||| || || ||| Sbjct 2137675 GTAAGACTTGGCGGAAGGAACCTTCTTGACGAACTCGGAGAGGTTACCCTTGTACTTTCG 2137616 Query 225400 GAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGA 225459 |||||||| || |||||| || | ||| | || || ||| ||||| ||||| Sbjct 2137615 GAGCTTGAA--TCG-CTCGTAGTGGATAATGTACTCACAGACGTTGTCGAGGAAACCAGA 2137559 Query 225460 GTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATGAGCCA 225519 ||||||||| || |||||||| | | | | |||| ||||||| ||| ||||| Sbjct 2137558 GTCGTGGGAGACGATGATGGAGGTAA--TACCACAGG-TGTTGAGGTAGTTGACCAGCCA 2137502 Query 225520 TGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATC 225579 || |||||| | |||| ||||| ||||| || || || |||||||| || || | Sbjct 2137501 AGCAACGTTGACGGTATCCAGATGGTTGGTAGGCTCATCAAGCAGCAGGATATCGGCCTT 2137442 Query 225580 AATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGAT 225639 ||||| |||| | |||| ||||||||| ||||| || || ||||| ||| ||| Sbjct 2137441 TCGGAGGACGGCGGTGGCAAGAGCCAGCTTCATCTTCCATCCACCAGACAGAGAGGTGAT 2137382 Query 225640 TGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGC---GTCTGGATAATGCG 225696 | | | | | | ||| || | | || || ||| || ||| Sbjct 2137381 GGGCATTCGGGTCATCTCGTCGGTGAACAGGAAGTCGAGCAGCTGGGTTCGGACCTCCTC 2137322 Query 225697 CTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAATCATATACGGTCAT 225756 ||| | | | || | || || | |||| || || ||| ||| ||| | | Sbjct 2137321 CTCAGTACCGATG---GACTCACCG--GCGGTCTTTCG-GACGTAGTCAACAACGTTGGT 2137268 Query 225757 GTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATC 225816 ||| | | | |||||||||||||||| ||| | || || || || Sbjct 2137267 GTCGGCGTGGGTACCGTCAATGTCGTGGTCGACGAAGACAGTTCGACACTCCTCCTGGGT 2137208 Query 225817 GGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCC 225876 |||||| ||||| | |||||| || ||||| || || | |||||| ||| || || || Sbjct 2137207 GGGGAAACCCTCGACCTGGCCGTTGGCAATGGCTCGCATCAGGGTGGACTTACCAGCACC 2137148 Query 225877 GTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGC-GCGTGGAGTTCA 225935 |||||| || ||| ||||| | || ||||| | || || || | || ||||| Sbjct 2137147 GTTGGGGCCACAGAGACCGTATCGTCGGCCTCGCTT-AAGTCGAAGCTGGGTTCGGTTCA 2137089 Query 225936 GGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCT 225995 | || |||||| |||| || || || |||||||| || | ||||| ||||| ||||| | Sbjct 2137088 GCAGAATCTTGGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCTCCCTCAT 2137029 Query 225996 CGGTCTCCT 226004 || ||||| Sbjct 2137028 CGTCCTCCT 2137020 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 |||||| || ||||| ||||||| || ||||| || ||||| || |||||||| ||||| Sbjct 3590254 CTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAAT 3590313 Query 68375 CTTTGCCTTGACGGCCTCGATGGTGTC 68401 ||| | ||||||| ||||||||||| Sbjct 3590314 CTTGGACTTGACGTTGTCGATGGTGTC 3590340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621950709080