Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq6 161 9e-35 >seq6 Length=1650383 Score = 161 bits (178), Expect = 9e-35 Identities = 392/586 (67%), Gaps = 27/586 (5%) Strand=Plus/Minus Query 20189 TTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGG-GTCTAAGACCAGTAAC 20247 ||||| | ||| || ||||||| ||||| || | ||| || ||| | || | || || Sbjct 1315110 TTGTACACGTGAGCGTCTCCCATAGTGTGGATGAGCTCGCCACAGTCCA-GATCGGTCAC 1315052 Query 20248 ATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACC 20307 || |||| ||| ||| || || | || ||||||||| || || || |||| ||| Sbjct 1315051 CTGGGCAATCATTCGAGTCAACAGAGCGTAAGAGGCAATGTTGAAGGGGACACCCAGACC 1314992 Query 20308 CATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCT--CACCG-TCAG----CT---- 20356 || || | |||| ||| |||||||| || || ||| | ||| || | || Sbjct 1314991 CAGATCACAGGACCGCTGGTACAGCTGGCACGACAGCCGGCCCCGCTCCGAGTTCTTGTA 1314932 Query 20357 ----ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGC 20412 ||||| || || || |||| ||||||||| || || |||||| |||| || || Sbjct 1314931 CGACACATAGAACTGGCAGAACATGTGACAGGGAGGCAGAGCCATCTTGGACAGATCGGC 1314872 Query 20413 CGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAAT 20468 |||||||| ||| ||| |||||||| || || || || || | || | | ||| Sbjct 1314871 AGGGTTCCATGCAGACAGAATGATTCGTCGGTCCTGGGGGTTGGTCTTGAGAGTGTGAAT 1314812 Query 20469 CCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGT 20528 | | | | | || || | |||||||| | ||||| | || ||| || Sbjct 1314811 CACC----TGCTTGAGCTGATCCACGCCCTGGCCACTGTAGTCTGTGTCGCAGTCTTTGT 1314756 Query 20529 ACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTC 20588 || | || ||||| || | ||| ||||| || || || ||||||| || ||||| | || Sbjct 1314755 ACTCGGCTCCAAAATGACGCCATTGGAAGCCATACACGGGTCCCAGGTCTCCCTCACGTC 1314696 Query 20589 TGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGA 20648 |||| |||| || | |||| |||||| |||| || ||| |||||| || | || Sbjct 1314695 TGTGTCCCAGTCCAGCCTTCTCCAGAAACTCCTTGGATCCGTTTCCGTCCCAGATGT-GA 1314637 Query 20649 CTCCTGTTCTTGAA-AGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCT 20707 | | || | | |||| | || ||| |||| || || |||||| ||||||||| Sbjct 1314636 ATGTTCTTTTCGCTCAGCTTCTTGCCGTCGGTACATCCGGCCACAAACCACAGCAGCTCT 1314577 Query 20708 TGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAA 20753 | || |||||||| | || |||||||||||||| || | |||| Sbjct 1314576 TCCAAAACGCCTCGGTAGAAGACCCGCTTTGTGGTGAGCAGAGGAA 1314531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441372584830760