Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 136 9e-27 seq1 114 3e-20 >seq3 Length=2682169 Score = 136 bits (150), Expect = 9e-27 Identities = 217/309 (70%), Gaps = 7/309 (2%) Strand=Plus/Minus Query 333687 TCGGTAAGGGCGTAGTAA--CTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGAT 333744 ||||| |||| ||||||| || || ||||| ||| ||| || || |||| ||| | Sbjct 2005894 TCGGTCAGGGTGTAGTAAGCCTTGCCC--TCGGGTCGCACCTTGACAAAGTCGGCCAGGT 2005837 Query 333745 TTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAG 333804 | |||||||| | |||||| ||| ||||| || ||| |||||| || | Sbjct 2005836 TGCCCTTGTAGTAGACCAGCTTCTTGTTC---TCGTAGTGCGCAATGTCGGTGCACACGG 2005780 Query 333805 CGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCA 333864 |||||||||| |||||||||||||| ||||||| | | | |||| | || | || Sbjct 2005779 CGTCGAGGAAGCCGGAGTCGTGTGAAACAATCAGCGAGGTGATGTCCGTGTGGGCCACCA 2005720 Query 333865 GGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAA 333924 |||| || ||||||| | ||||| ||| |||||||| || |||||||| || | Sbjct 2005719 GGTAGTCCTGCAGCCACTTGACGTTGCCCACGTCCAGATGGTTAGTAGGCTCGTCCAGCA 2005660 Query 333925 GTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTC 333984 | || | | || |||| |||||| || || || || | || ||||| ||||| |||| Sbjct 2005659 GCAGAATGTCGGCCTTCATGAGCATGGCTCGGGCCAGCTCCAGCTTCATCTTCCATCCTC 2005600 Query 333985 CTGAAAGAG 333993 | || |||| Sbjct 2005599 CAGACAGAG 2005591 Score = 95.1 bits (104), Expect = 3e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 243511 GAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGC 243570 || || |||| | ||| |||| ||| | |||||| | || ||| | || | ||| Sbjct 1915078 GAGGCCGTTGGCATCGAGCAGGAGTTCCTGACCGACGCGCTCCCCTGCGGTCTGCTGGGC 1915019 Query 243571 ATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCG 243630 |||||| | | |||||| | |||||||| || || || |||||||| | | | || Sbjct 1915018 ATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTTGTGGCCGACCGGCTGCTGGTGGCC 1914959 Query 243631 CTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCG 243690 || || | || || |||||||||| |||||||| | ||| |||||| ||| ||| Sbjct 1914958 CTCGGAAACTCCAAGGTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCG 1914899 Query 243691 CTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 || || || || ||||||||||| ||||| || Sbjct 1914898 CTGGCCGGCAAGACCAACTTCTTCGAGAAGCGGGT 1914864 >seq1 Length=4810746 Score = 114 bits (126), Expect = 3e-20 Identities = 132/175 (75%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 334181 ggggAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || | ||| ||||| |||| || |||||||| || || ||||| || || Sbjct 2137207 GGGGAAACCCTCGACCTGGCCGTTGGCAATGGCTCGCATCAGGGTGGACTTACCAGCACC 2137148 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACC-GCGTATTGTTCA 334299 ||| || ||||| |||||||| || || ||||| || | ||| | | || ||||| Sbjct 2137147 GTTGGGGCCACAGAGACCGTATCGTCGGCCTCGCTTAAG-TCGAAGCTGGGTTCGGTTCA 2137089 Query 334300 GAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 | ||||| || |||| || |||||||| || ||||| | |||||||||||| || Sbjct 2137088 GCAGAATCTTGGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCTCC 2137034 Score = 87.8 bits (96), Expect = 4e-12 Identities = 240/361 (66%), Gaps = 14/361 (4%) Strand=Plus/Minus Query 333637 TGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGG 333696 ||| |||||| ||||| |||||||||||||| | || ||| | | || Sbjct 2137739 TGACACCCTCAAGGAAACCGGGCTCGGGGAAAGAGAAGTTGATCTCGGAGGCACCCAGCT 2137680 Query 333697 CGTAGTAACTC---GCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGT 333753 |||||||| | || || ||| |||||| ||||||||||| || || ||||||| Sbjct 2137679 CGTAGTAAGACTTGGCGGAA---GGAACCTTCTTGACGAACTCGGAGAGGTTACCCTTGT 2137623 Query 333754 ACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGA 333813 |||| ||||| | | ||||| |||||||| | || || |||||||| Sbjct 2137622 ACTTTCGGAGCTTGAATC---GCTCGTAGTGGATAATGTACTCACAGACGTTGTCGAGGA 2137566 Query 333814 ACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAA 333873 | || |||||||| || || || | | | | || | | |||| | | ||||| | | Sbjct 2137565 AACCAGAGTCGTGGGAGACGATGATGGAGGTAA--TACCACAGGT-GTTGAGGTAGTTGA 2137509 Query 333874 TCAGCCACCTCACGTTAGACAC-AGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGC 333932 |||||| ||||| ||| | ||||||||||| ||||| ||||| || || | Sbjct 2137508 CCAGCCAAGCAACGTT-GACGGTATCCAGATGGTTGGTAGGCTCATCAAGCAGCAGGATA 2137450 Query 333933 TTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAGA 333992 | || || |||| | || |||||||| || ||||| ||||| || || || ||| Sbjct 2137449 TCGGCCTTTCGGAGGACGGCGGTGGCAAGAGCCAGCTTCATCTTCCATCCACCAGACAGA 2137390 Query 333993 G 333993 | Sbjct 2137389 G 2137389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879448904650