Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 3e-15 seq7 86.0 6e-12 >seq5 Length=1963011 Score = 96.9 bits (106), Expect = 3e-15 Identities = 170/246 (69%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 154804 TCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGAC 154863 |||| || | |||||| || ||||||||| | ||||||| || || ||| Sbjct 1037562 TCTCGTACTCCTCGTACTTTTGTTCAAACTCGGGGCCCCACACGTCTTCCAGTCCCGGA- 1037504 Query 154864 AGCGGTC--GGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAA 154921 || || |||||| | ||| |||||| ||||| | | || || ||||| |||| Sbjct 1037503 -GCCTTCTTGGGACAGAACAACGACCACTTTTCGCCCCGCTCGACCCGCTTCATGAACAG 1037445 Query 154922 ATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTT 154981 || ||||||||||| ||||| |||| || || || | || ||||| || || ||| Sbjct 1037444 GTCGGGCACCCACAATGCGTAGAACAGGTCCCGGGCTCTGTTCTCTTCGGCTCCATGGTT 1037385 Query 154982 TCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCAT 155041 | | | ||| | |||||| |||||||||||||||||||| | ||| | ||| | Sbjct 1037384 TTTCCGCAGATTGAGAAAATCGAGAATGTCGGCGTGCCACGGCTCCAGATAGATGGCAAA 1037325 Query 155042 CGCGCC 155047 |||||| Sbjct 1037324 CGCGCC 1037319 >seq7 Length=1109975 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || || || ||||| | || || || || || |||||||| || | Sbjct 1062783 ACCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1062724 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || |||| || |||||||| ||||| | || || ||||||||||| || || Sbjct 1062723 AAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1062664 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || || || ||| || || | || || | ||||| Sbjct 1062663 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1062604 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445 || | || | ||||| ||||| | || || || ||||| ||||||| Sbjct 1062603 CTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1062554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644556423160