Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3 154 1e-32 seq5 122 8e-23 seq7 107 2e-18 seq2 95.1 1e-14 >seq3 Length=2682169 Score = 154 bits (170), Expect = 1e-32 Identities = 470/720 (65%), Gaps = 25/720 (3%) Strand=Plus/Minus Query 46861 TGGCCTTCTTTGCCGCCGCCGACAGCATAGTCAACATCAACATCATCGAGCACATGCAGC 46920 ||||||||||||||||| | ||| |||| |||||| ||| | | |||| | Sbjct 1915569 TGGCCTTCTTTGCCGCCTCGGACGGCATCGTCAACGAGAACCTGGTGGAGCGGTTTTCCG 1915510 Query 46921 GCACCGTGCCCGAACTGGAGGCGCAGTACTTTTACAATCAACAAGTGCTCATCGAATGCA 46980 || |||| | | ||||| ||| ||| ||| || | | || || || Sbjct 1915509 GCGAGGTGCAGGCCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATGATGGAGAACA 1915450 Query 46981 TCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACGAAGAGAAGC-AA 47039 ||||| |||||| ||| || || || || | |||||| ||| || ||| || Sbjct 1915449 TCCACTCGGAAACCTACTCGCTGCTGATCGACACATACATCAAGGACCCCAAGGAGCGAA 1915390 Query 47040 GCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCC 47099 | || || || |||| |||||| ||| |||||| | | |||||||| ||||| Sbjct 1915389 CCTAC-CTGTTCAACGCCATCGAGACCATTCCCTGCATCAAGAAGAAGGCCGACTGGGCG 1915331 Query 47100 ATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATC 47159 | |||| || |||| | ||| | | ||| || | || || || ||| | Sbjct 1915330 CTCAAGTGGATCTCCGACGACGAGTCCACCTTTGGCGAGCGACTCATTGCCTTTGCCGCC 1915271 Query 47160 GTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGA 47219 || |||||| |||| ||||| ||| ||||| | || || | | || | ||| Sbjct 1915270 GTGGAGGGCATCTTTTTCTCCGGCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGT 1915211 Query 47220 GTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACC 47279 | ||||||||||| || || ||||||||| ||||| ||||||| || |||||||| Sbjct 1915210 CTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACG 1915151 Query 47280 AACTTTGCCTGTCTC---TACTA-CAACACTAGAGTCGA---TCAAAAGTTGGACGTGCC 47332 ||||||||||||| | || || | | ||| || || || || | Sbjct 1915150 GACTTTGCCTGTCTGCTGTTCTCGCACCTCGAGAACCGGCCCTCCAA-----GAAG---- 1915100 Query 47333 CACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGC 47392 | ||| ||| || ||| ||| ||||| | ||| ||| |||||| | |||| || Sbjct 1915099 -ATTGTCGAGGACGTGATTGTCGAGGCCGTTGGCATCGAGCAGGAGTTCCTGACCGACGC 1915041 Query 47393 TCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGT 47452 || ||| | | |||| |||||||| || | ||| | ||||||| || ||||| Sbjct 1915040 GCTCCCCTGCGGTCTGCTGGGCATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTTGT 1914981 Query 47453 CGCCGACCGCCTGCTCGTTCAGCT---AAAGTATCCCAAGATTTACCACACCGAGAATCC 47509 |||||||| ||||| || || ||| | ||||| | ||| || || || || Sbjct 1914980 GGCCGACCGGCTGCTGGTGGCCCTCGGAAACT---CCAAGGTCTACAACTCCACCAACCC 1914924 Query 47510 ATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569 ||||| || ||| | ||||| ||||| | |||||||||||||| ||||||||||| || Sbjct 1914923 CTTCGACTTCATGGAGAACATCTCGCTGGCCGGCAAGACCAACTTCTTCGAGAAGCGGGT 1914864 >seq5 Length=1963011 Score = 122 bits (134), Expect = 8e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146043 GAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAG 146102 |||| |||| || || | |||||||||||| ||||||||||||| | || |||| ||| Sbjct 1038392 GAGGTCCTTCATCAGCCAGTGGTTGACCACCAGAAACTCGCCGGCCTGCACTCGCCGCAG 1038333 Query 146103 ATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGT 146162 || | |||| ||| | |||||||| ||||||||| ||||| ||||| | || | Sbjct 1038332 GTAAATGTTGGACGTGTAGGGCTCGAAGCACTCGTTGTGGCCGAGGATCTGGGAGGTAGA 1038273 Query 146163 AGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||||||||||||| |||||||||| ||||| | || ||| || Sbjct 1038272 AGCGGTAGGCATGGGAGCCACCAGCAGCGAGTTGCGCATGCCATG 1038228 Score = 89.7 bits (98), Expect = 5e-13 Identities = 333/512 (65%), Gaps = 19/512 (4%) Strand=Plus/Minus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTT- 146738 ||||| || || || | ||| |||||| | |||||| | |||| || | ||||| Sbjct 1037740 TACTGGACGATTTCCGTGCACAGGTTGGACGATTTGATGGTTCCCAGGTTCTGCTGGTTG 1037681 Query 146739 -ACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGG 146797 ||| | ||||||| ||||||||| |||||| | || || |||||||||| | | Sbjct 1037680 GACTTTGC--GTTGCAGCTGTCCTTGTACAGCATGAAGGGGCCTCCGGTTTCGATCTGG- 1037624 Query 146798 TCTCGACGATGAATC----TAAACAAATCTCTGGCCTTTA-CTTGTCTTTCGTACAGTTT 146852 |||| | ||||| | |||| || ||| || | || | | || |||||| Sbjct 1037623 -CTCGTCA--GAATCGCCTTGAACAGCTCCTGGGCGTTGATCTGGGCGTT-GTACAGGCC 1037568 Query 146853 ATTCTTTTCGTATTTCTCGTACAATATTTCAAAACTAGAACCGTACTCGTCGAGGAGGCC 146912 | || ||||| | ||||||| | |||||| | || || |||| || || Sbjct 1037567 CCTTTTCTCGTACTCCTCGTACTTTTGTTCAAACTCGGGGCCCCACACGTCTTCCAGTCC 1037508 Query 146913 GGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAA 146972 ||| ||| ||||||||||||| |||||| | || | || || || | ||| || Sbjct 1037507 CGGAGCCTTCTTGGGACAGAACAACGACCACTTTTCGCCCCGCTCGACCCGCTTCATGAA 1037448 Query 146973 CAAATCGGGAATCCA-AAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCA 147031 || ||||| | ||| || || || | || ||| || || || || |||| || Sbjct 1037447 CAGGTCGGGCACCCACAATGCGTAG-AACAGGTCCCGGGCTCTGTTCTCTTCGGCTCCAT 1037389 Query 147032 TGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGG 147091 ||| | || ||||| | |||| ||| || | ||||| ||||||| || || Sbjct 1037388 GGTTTTTCCGCAGATTGAGAAAATCGAGAATGTCGGCGTGCCACGGCTCCAGATAGATGG 1037329 Query 147092 CGAGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGA 147148 | | ||||| ||| || || ||||| || |||| | | | |||| ||||| | Sbjct 1037328 CAAACGCGCCGGGACGCTTGTTCCCACCCTGGTCCACGTACCTCGCGGTGTTGTTGAACA 1037269 Query 147149 CTCGTAACATGGACACGAGGCCGCCGGATTTT 147180 ||| | ||||| ||||| ||| | |||| || Sbjct 1037268 CTCTGAGCATGGGCACGATGCCACTGGATCTT 1037237 >seq7 Length=1109975 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| || | ||| | || ||||| || || || ||||| || Sbjct 1062782 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1062723 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| |||| | ||||||||| || || || Sbjct 1062722 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1062663 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| ||||| ||| |||||| | | ||| || Sbjct 1062662 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT-CGATGGTGTCGGAAGACTCCAC 1062604 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || ||||| || || || |||||||||||||| Sbjct 1062603 CTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1062556 >seq2 Length=2949780 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/163 (74%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | ||||||||| || || || |||||||||||| Sbjct 2456671 TCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 2456612 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||||| |||| || | |||||| | | ||| || |||| ||| | Sbjct 2456611 TCCTGGATCTTGGACTTGACGTTG-TCAATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 2456553 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA-TGGCTTA 127119 || ||||| || || || || ||||| || |||| ||| ||| Sbjct 2456552 GGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTGGGTTA 2456510 Score = 86.0 bits (94), Expect = 6e-12 Identities = 334/511 (65%), Gaps = 27/511 (5%) Strand=Plus/Plus Query 147070 TGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTTA---CCGCCCTGATCGACG 147126 ||||| ||||||| ||| ||| | || || |||||| |||||||| |||||| Sbjct 80180 TGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCGCCCTGGTCGACG 80239 Query 147127 TGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGATTTTG---TG 147183 | || | |||| ||| | ||||| | ||||| ||||| ||| ||| || || Sbjct 80240 TATCGAGCGGTGTTGTTGTACACTCGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTG 80299 Query 147184 GTGCC---GTTGTATTGAGC-----GCT--GACGCTTTGCACGCTCAGCCCGAGACCTCC 147233 || || | |||| |||| ||| || | | || | | ||| || | ||||| Sbjct 80300 GTTCCAGCGATGTAG-GAGCCGGTAGCTCGGATGTTGTGGATGGACAGACCAATGCCTCC 80358 Query 147234 GCCCAGATTCGAAATCAAAGCGGAC-TCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGT 147292 | || ||||| | ||| | || || || | | |||||||||||||||| || Sbjct 80359 AGCGGACTTGGAAATGAGAGCACAAGTCTTGAGAG-TGTCGTAGATGCCGTCGATGGAGT 80417 Query 147293 CTTCCTTGATGCATTG--CAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGC 147350 | ||||| ||| ||| ||||||||||| |||| ||||| | ||||| || Sbjct 80418 CGTCCTTCATG--TTGACGAGGAAACACGACGACATCTGGGGCTGGGGGGTGCCTGCGTT 80475 Query 147351 AAACAGCGTGGGGCTGGCGTGCGTGAACGTGC-CCAGACTCATCAATTGATACGTTTCAA 147409 |||| ||||| || || ||||| || | | || ||| | | || || || | Sbjct 80476 GTACAGGGTGGGAGAAGCATGGGTGAA-GTACTTCTGAGACATGTAGTTGTAGGTCTCGA 80534 Query 147410 TGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGG 147469 | || | || ||| |||||||| || | | | || ||||||| ||| ||||| | Sbjct 80535 TAGCTCGGGCAATGTCGTCGCCGTGGATACCGACAGACACTCGCATGATCATCTGCTGAG 80594 Query 147470 GTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGGT-CAGAGTTTTGAAA 147528 ||| || |||| | | |||||| | || ||| | | | | |||||| ||||| Sbjct 80595 GTCTCTCAGCAACGGCACCGTTGACTCGCAGCAGGTATGC-TCGCTCCAGAGTCTTGAAG 80653 Query 147529 CCAAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559 |||||||| |||||| | |||| |||| || Sbjct 80654 CCAAAGTAGTTGTAGGTGAAGTCTCTGTCGT 80684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500568193360