Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 132 4e-26 seq7 93.3 4e-14 >seq2 Length=2949780 Score = 132 bits (146), Expect = 4e-26 Identities = 548/853 (64%), Gaps = 15/853 (2%) Strand=Plus/Minus Query 122915 TCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGAC 122974 ||| || ||| ||||||| || || | || | ||||| |||||| | || | Sbjct 80593 TCAGCAGATGATCATGCGAGTGTCTGTCGGTATCCACGGCGACGACATTGCCCGAGCTAT 80534 Query 122975 CGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGC 123034 ||| || ||| | | |||||||| || | ||||| || || |||||| ||| | Sbjct 80533 CGAGACCTACAACTACATGTCTCAGAAGTACTTCACCCATGCTTCTCCCACCCTGTACAA 80474 Query 123035 CGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAG 123094 ||| ||||| ||| ||| |||| |||||||| | ||| | || || ||| Sbjct 80473 CGCAGGCACCCCCCAGCCCCAGATGTCGTCGTGTTTCCTCGTCAACATGAAGGACGACTC 80414 Query 123095 CATCACCGGTATCTATGAAACTTTGCGCGA-TTGCGCGTTGATTTCCAAATTTGGCGGCG 123153 |||| ||| ||||| || ||| | | || ||| || | |||||||| | | || | Sbjct 80413 CATCGACGGCATCTACGACACTCT-CAAGACTTGTGCTCTCATTTCCAAGTCCGCTGGAG 80355 Query 123154 GCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACG 123213 |||| || || | | ||| || | ||| ||| | |||| | ||| ||| Sbjct 80354 GCATTGGTCTGTCCATCCACAACATCCGAGCTACCGGCTCCTACATCGCTGGAACCAACG 80295 Query 123214 GAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCG 123273 ||| | || ||| ||| ||||||||||||| ||||| ||| ||| || |||||| Sbjct 80294 GAACCTCCAACGGTATCGTGCCCATGCTGCGAGTGTACAACAACACCGCTCGATACGTCG 80235 Query 123274 ACCAGGGCGGCAA-ACGCAA--AGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTG 123330 ||||||||||||| | || | || || | || || || || || || ||||||| | Sbjct 80234 ACCAGGGCGGCAACAAGCGACCCGGAGCCTTTGCCATGTACCTGGAGCCCTGGCACGACG 80175 Query 123331 ATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCG 123390 | || | ||| || | | | | ||| || ||| || | |||||| | Sbjct 80174 ACGTCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGTAAGGAGGAGATTCGAGCCCGAG 80115 Query 123391 ATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCG 123450 || |||| ||| | ||| | ||||| |||| ||| || || | | ||| || Sbjct 80114 ATCTGTTCCTGGCTCTCTGGATCCCCGACCTGTTCATGGAGCGAGTCGAGCAGAACGCCG 80055 Query 123451 TGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGG-CTTGAGCGACGTTTACGGCAATCAG 123509 |||| | |||||||| ||| | ||||||||| ||||| ||||| |||||| | || Sbjct 80054 AGTGGACCCTCATGTGCCCCAACGAGTGTCCCGGCCTTGA-TGACGTCTACGGCGACGAG 79996 Query 123510 TTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGC--AAACAGGTTAGTCAGGTTCCGG 123567 || | || |||||| ||| |||||| || ||| | | | | || | || | Sbjct 79995 TTCAAGCAGCTGTACGAGCAGTACGAGAAGGAGGGCCGAGGCCGACGAACCA--TCCCCG 79938 Query 123568 CACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGC 123627 | | | ||| | ||| | || || ||| |||| | || | ||||| Sbjct 79937 CCCAGAAGCTGTGGTACCACATTCTGGACTGTCAGACCGAGTCCGGCAACCCCTTCATGC 79878 Query 123628 TCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTA 123687 ||||||| ||| |||||||| | || |||| |||| ||| |||| || || || || Sbjct 79877 TCTACAAGGACTCCTGCAACCGAAAGTCCAACCAGAAGAACCTGGGTACTATCAA--GTC 79820 Query 123688 GT--AATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAA 123745 || || || |||| ||| ||| |||| ||| | | || | |||||||| || || Sbjct 79819 GTCCAACCTGTGCTGCGAGATTGTCGAGTACTCGTCTCCTGACGAGGTGGCCGTCTGCAA 79760 Query 123746 TTTGGCTTCGATT 123758 |||| || ||| Sbjct 79759 CCTGGCCTCCATT 79747 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | || || || ||||| || || ||||| ||||| || || || Sbjct 2456746 ATACCTCCTCGGAGACGCAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCA 2456687 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | || | ||| ||||||||||| Sbjct 2456686 GAAAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCCGGG 2456627 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || || || || |||| || | || | ||||||||||||||| Sbjct 2456626 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCGGAAGACTC 2456568 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCA 45339 || ||||| || | || ||||| || || || || ||||| ||||||| Sbjct 2456567 CACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 2456518 >seq7 Length=1109975 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | || || ||||| || || || ||||| ||||| || || || Sbjct 1062782 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1062723 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || || | || || || ||| | || | ||| ||||||||||| ||| Sbjct 1062722 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1062663 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || || || || || |||| || | || | ||||||||||||||| || Sbjct 1062662 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCAC 1062604 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || ||||| || || || |||||||| ||||| Sbjct 1062603 CTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1062556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002979648440