Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3 280 2e-70 seq2 235 9e-57 seq5 154 2e-32 >seq3 Length=2682169 Score = 280 bits (310), Expect = 2e-70 Identities = 535/781 (69%), Gaps = 13/781 (2%) Strand=Plus/Plus Query 159628 CTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687 ||||| ||| | ||||| ||||||||| |||||||||||||| ||| || || Sbjct 1914848 CTTCTGGTAGTCGGACACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTT 1914907 Query 159688 TTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAG 159747 |||||||| |||| ||||| | || ||| ||| | |||||| ||| |||| Sbjct 1914908 CTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGAGTTTCCGAGGGCCACCAG 1914967 Query 159748 CAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAG 159807 || || ||| |||||||| || ||||| ||||| ||| ||| || |||||||| Sbjct 1914968 CAGCCGGTCGGCCACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCCAGCAG 1915027 Query 159808 CCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAAT 159867 | ||||||||| || | ||| ||||||| ||| || | || || ||| ||||| Sbjct 1915028 ACCGCAGGGGAGCGCGTCGGTCAGGAACTCCTGCTCGATGCCAACGGCCTCG---ACAAT 1915084 Query 159868 C---TGCGAGACACGTTCGTACCCCGGCTTGCCCAAAAT-GTGGTCCTTAAACAGGAGGC 159923 | | | |||| || | | || ||| | | ||| | ||||| || | Sbjct 1915085 CACGTCCTCGACAA--TCTT--CTTGGAGGGCCGGTTCTCGAGGTGCGAGAACAGCAGAC 1915140 Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983 | |||||||| |||||| |||||||| || ||||||| ||||||||| | | | |||| Sbjct 1915141 AGGCAAAGTCCGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTCAGGC 1915200 Query 159984 CCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGA 160043 | ||||||| || ||| |||||||| || |||| ||||| | ||| ||||||| Sbjct 1915201 CGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCGGAGAAAAAGA 1915260 Query 160044 TCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGG 160103 | ||||||||||| ||||| || | ||| | ||| ||||| | || | | ||| | Sbjct 1915261 TGCCCTCCACGGCGGCAAAGGCAATGAGTCGCTCGCCAAAGGTGGACTCGTCGTCGGAGA 1915320 Query 160104 TCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAA 160163 ||||| | ||||| || |||||||| |||||| || ||| ||||| |||||| | Sbjct 1915321 TCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCGATGGCGTTGA 1915380 Query 160164 ACA-ATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATT 160222 ||| | || | ||||||| |||||||| || | |||||| |||||| || Sbjct 1915381 ACAGGTAGGTTC-GCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTT 1915439 Query 160223 TCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC 160282 || | ||| | || || || ||||| ||| |||||| | | ||||| | | Sbjct 1915440 TCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCC 1915499 Query 160283 TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCA 160342 |||||||| | |||| | |||| || | || || | ||||| | ||| ||| Sbjct 1915500 TGCACCTCGCCGGAAAACCGCTCCACCAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCA 1915559 Query 160343 AAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAG 160402 ||||| |||| |||||| |||||||| | |||||| |||||||| | || |||||| Sbjct 1915560 AAGAAGGCCAGCACGTGGGAGATGAAGAACCGCTCGTCGTTGTTGAGCCGGTTCTCCCAG 1915619 Query 160403 T 160403 | Sbjct 1915620 T 1915620 >seq2 Length=2949780 Score = 235 bits (260), Expect = 9e-57 Identities = 344/480 (72%), Gaps = 10/480 (2%) Strand=Plus/Plus Query 203849 GTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGG 203908 |||||||| |||| | | |||| | || ||| ||| ||||||||||||||||| || Sbjct 78833 GTGAACTGGATGGGGGCAGCAGCAGCCATGGTTCGCAGGTAGTACATGCCGGTCTTGAGA 78892 Query 203909 CCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATG 203968 ||||||| ||| ||||| | ||||||||| | || |||| || | ||||||| ||| Sbjct 78893 CCCTTCTTCCAGCCGTAGAAGTGCATGGAGGTGAGCTTGCCCATGGTGGGGTCCTTGATG 78952 Query 203969 TGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATA 204028 || ||||| ||||||||| ||||| ||||| || | || || || ||||| | ||| Sbjct 78953 TGGATGTTGAGAGACTGGGACTGGTCAATGAAGGGGGATCGGTCAGCAGCCATCTCGATG 79012 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTGAGGCACA 204088 || ||||||||||||||||||||| |||||| ||| ||| || | | || || | Sbjct 79013 ATTCGCTTCTGCGAAATCTCCCACACGGTCTTGTACAGGTCCTTGATCTCCTGGGGGATG 79072 Query 204089 TCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC---TCATCCTCGTCTCCTC 204144 | | | || ||| | || ||||||||||||| | || || || | ||||| | Sbjct 79073 T-TGGGGATGTTCTGCACGGATCCGTTGTCGGCCACGATTCGGTTCTTCATGGTCTCAT- 79130 Query 204145 CCCCCACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGT 204203 ||||| | || |||| | ||| ||| | ||| |||||||| ||||| || | Sbjct 79131 --TCCACA-GTCCGACCTCAACCAGGTCCTTGAGCAGCCAGGGGTTGACAATCTGGAACT 79187 Query 204204 CTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGT 204263 | || | ||||| | ||| | | | | |||| |||| | || ||||| ||||||| Sbjct 79188 CGCCAGCAAGCACTCGTCGAGAGTAAATGTTGGAGGTGTAGGGCTCGAAACACTCGTTGA 79247 Query 204264 TGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCA 204323 ||||| |||||| | |||| ||| ||||||||||| |||| ||||| ||||| |||| Sbjct 79248 AGCCGAGAATCTGCGAGGTGGAGGCGGTGGGCATGGGGGCCACCAGCAGCGAGTTTCGCA 79307 Score = 187 bits (206), Expect = 4e-42 Identities = 566/858 (66%), Gaps = 20/858 (2%) Strand=Plus/Plus Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982 |||| | || |||||| ||||| ||||| |||||||||||||| | |||||| || | Sbjct 79832 CCCAGGTTCTTCTGGTTGGACTTTCGGTTGCAGGAGTCCTTGTAGAGCATGAAGGGGTTG 79891 Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTC 205042 ||| ||| ||||| | |||||||||| ||||| | | || | || ||| Sbjct 79892 CCGGACTCGGTCTGACAGTCCAGAATGTGGTACCACAGCTTCTGGGCGGGGA--TGGTTC 79949 Query 205043 ACGTACATC--CCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACA 205100 | || || | |||||| | ||||||| | || || ||||| | Sbjct 79950 GTCGGCCTCGGCCCTCCTTCTCGTACTGCTCGTACAGCTGCTTGAACTCGTCGCCGTAGA 80009 Query 205101 CGTCCATCA-GCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC 205159 |||| |||| | || ||||| | ||||| ||||| || | |||| || | ||| | | Sbjct 80010 CGTC-ATCAAGGCCGGGACACTCGTTGGGGCACATGAGGGTCCAC-TCGG--CGTTCTGC 80065 Query 205160 ---ACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTA 205216 || | |||||| ||||||||| |||||| || | |||||||| ||||| | | Sbjct 80066 TCGACTCGCTCCATGAACAGGTCGGGGATCCAGAGAGCCAGGAACAGATCTCGGGCTCGA 80125 Query 205217 ATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTC-CAGCCAAGCCGCA-ATGTCGGCGTGCC 205274 || | || | || |||||||| || || ||| || || | | |||| |||||| Sbjct 80126 ATCTCCTCCTTACCGTGGTTCTTTCGCAGCTCGCAG--AACTCGAAGACGTCGTCGTGCC 80183 Query 205275 ACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGC 205334 | ||||| | ||| ||| | || || || | |||||| || |||||||| || | Sbjct 80184 AGGGCTCCAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCGCCCTGGTCGACGTATC 80243 Query 205335 GAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394 ||| | |||| | ||||||||||| ||||| | |||||||| ||| ||||| || | Sbjct 80244 GAGCGGTGTTGTTGTACACTCGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTGGTTC 80303 Query 205395 TGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAAC 205454 |||| ||||| ||| | | |||| ||||| | ||||| || |||| Sbjct 80304 CAGCGATGTAGGAGCCGGTAGCTCGGATGTTGTGGATGGACAGACCAATGCCTCCAGCGG 80363 Query 205455 ACTTGGCGATCTGGGCGC-ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCC 205513 |||||| || | || | | ||||| |||||| ||||||||| ||||||| |||||| Sbjct 80364 ACTTGGAAATGAGAGCACAAGTCTTG-AGAGTGTCGTAGATGCCGTCGATGGAGTCGTCC 80422 Query 205514 GCCAGTGTCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGC 205573 || | || || | ||||| | || || || | |||||| |||| | | || Sbjct 80423 TTCATGTTGACGAGGAAACACGACGACATCTGGGGCTGGGGGGTGCCTGCGTTGTACAGG 80482 Query 205574 GTGGGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTC 205633 ||||| || ||| ||||| ||||| || | |||||||||| | | | Sbjct 80483 GTGGGAGAAGCATGGGTGAAGTACTTCTGAGACATGTAGTTGTAGGTCTCGATAGCTCGG 80542 Query 205634 TCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCC 205693 | | ||| |||||| ||||| | | | | ||||| | || |||||||||| | Sbjct 80543 GCAATGTCGTCGCCGTGGATACCGACAGACACTCGCATGATCATCTGCTGAGGTCTCT-C 80601 Query 205694 ATCACCCTC-TCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAA 205752 | || | | |||| || ||||| || |||| ||| || || || | |||| | Sbjct 80602 AGCAACGGCACCGTTGACTCGCAGCAGGTATGCTCGCTCCAGAGTCTTGAAGCCAAAGTA 80661 Query 205753 GTTGAAGGTGTAGTCCCT 205770 |||| ||||| |||| || Sbjct 80662 GTTGTAGGTGAAGTCTCT 80679 >seq5 Length=1963011 Score = 154 bits (170), Expect = 2e-32 Identities = 511/777 (66%), Gaps = 42/777 (5%) Strand=Plus/Minus Query 203836 CGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACAT 203895 || ||||||||| |||||||| |||||| | || ||| | | ||| || ||||| Sbjct 1038722 CGACTTGTCCACTGTGAACTGGATGGCGGCTGCTGCGGGCGGAGTACGCAGGTAATACAT 1038663 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || ||| | | ||| |||| | ||||||| | | ||||| ||| Sbjct 1038662 GCCCGTCTTGAGACCCATTTTCCAGCCGTGGAAATGCATGGCGGTGATTTTGC---CGTG 1038606 Query 203956 GGGG---TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012 || | ||| |||| |||||| || ||||| |||||| ||| | || || || | Sbjct 1038605 GGTGATTTCGCGCATGAAAATGTTGAGCGACTGCGATTGGTCAATGTACGGTGCTCGCGC 1038546 Query 204013 TGCGGCCATATTGATAATGGTCTTCTG--CGAAATCTCCCACACCGTCTTGAACACGTCT 204070 || ||||| | ||| ||| || | | | || |||||| | || | ||||| | Sbjct 1038545 GGCAGCCATGTCGATGATG--CTGCGGGCCTTGATTTCCCACGCGGTGCGGTACACGGCG 1038488 Query 204071 CTGGTGTGTTGAGGCACATCTTCCC-ACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC 204128 | | ||| || || | ||| | | ||| ||||||||||||||| || | || Sbjct 1038487 CGGATGTTTTCGGGAA--TCTGGGTGATGGACTGGATCGAGCCGTTGTCGTGGATGATTC 1038430 Query 204129 TCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGT 204188 || || ||||||| ||||||||||| | |||| || ||| || ||| | ||| Sbjct 1038429 GGTTCTTCATCTCCTCGTTCCACATGCCCAGCTTGATGAGGTCCTTCATCAGCCAGTGGT 1038370 Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 ||| | | |||| || |||| | |||| | || | | | |||| ||| | || | Sbjct 1038369 TGACCACCAGAAACTCGCCGGCCTGCACTCGCCGCAGGTAAATGTTGGACGTGTAGGGCT 1038310 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 |||| |||||||| ||||| ||||| | ||| || || ||||||||||||| | Sbjct 1038309 CGAAGCACTCGTTGTGGCCGAGGATCTGGGAGGTAGAAGCGGTAGGCATGGGAGCCACCA 1038250 Query 204309 GCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---GT 204365 |||| |||||||||| || | || || || ||| || || |||||| | Sbjct 1038249 GCAGCGAGTTGCGCATGCCATGCTTGGCGAGATTGGTCTTGAGCAGGGCCCAGTCCCAGA 1038190 Query 204366 GCATCGCACTGGGTTTCACGCCCCACATGTCGAACTG--AAAGATGCCTTGACTGACTGG 204423 | ||| | ||| || | ||||| || ||||| |||| ||||| ||| | || Sbjct 1038189 G-ATCCGA--GGGAGTCTTGTTCCACAGATCAAACTGCAGAAGA-CCCTTG-CTGGCAGG 1038135 Query 204424 GCTGCCCTTGTACGTCGGATAAGGCTGATCC----TCTTCTGCCAGCT---TGCACG--A 204474 ||||||| ||| | | ||| || ||| ||| ||||||||| || ||| Sbjct 1038134 ACTGCCCTCGTATGACTCATAGGG----TCCCAGTTCTGCTGCCAGCTCAATGGACGCTT 1038079 Query 204475 GGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGCGGCCTC 204534 || | || ||||| ||| |||||||| ||||| ||||||| | | || || || Sbjct 1038078 CGCAGGCA--GCGTG---GTAAATGGTCTCGAAGATGAGAACGTTCAGTTCCGCAGCTTC 1038024 Query 204535 CGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCC 204591 | | ||| | | || | |||| | ||||||||| |||| |||||||| || Sbjct 1038023 AGGGCTATCATAGGGCATGCGCAGCTTCATAAACACGTCTGCCAGACCCTGCACGCC 1037967 Score = 107 bits (118), Expect = 3e-18 Identities = 322/489 (66%), Gaps = 16/489 (3%) Strand=Plus/Minus Query 205098 ACACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTT 205157 ||||||| ||| || ||| || |||||||| | || |||||| | | | | Sbjct 1037523 ACACGTCTTCCAGTCCCGGAGCCTTCTTGGGACAGAACAACGACCACTTTTCGCCCCGCT 1037464 Query 205158 TCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAA 205217 |||| || ||| ||||||||| | ||||| |||| ||||| || ||||| || Sbjct 1037463 CGACCCGCTTCATGAACAGGTCGGGCACCCACAATGCGTAGAACAGGTCCCGGGCTCTGT 1037404 Query 205218 TTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACG 205277 | | ||| ||||| |||| || || | || || | ||||||||||||||||| Sbjct 1037403 TCTCTTCGGCTCCATGGTTTTTCCGCAGATTGAGAAAATCGAGAATGTCGGCGTGCCACG 1037344 Query 205278 GCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCC----ACCATG 205333 |||| | | | ||| | ||||| || | ||||||||||||||||||| ||| | Sbjct 1037343 GCTCCAGATAGATGGCAAACGCGCCGGGACGCTTGTTCCCACCCTGGTCCACGTACCTCG 1037284 Query 205334 CGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCG-T 205392 || || | |||||| |||| ||||| ||||| | || ||| | || | | Sbjct 1037283 CG-GTGTT---GTTGAACACTCTGAGCATGGGCACGATGCCACTGGATCTTCCTTGAGAC 1037228 Query 205393 GCTGT--TGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCA 205450 |||| | || || ||| | || | | |||| ||| | || || ||||| Sbjct 1037227 CCTGTAATAATAGC---GCCCTTGGCTCGGATGTTGTGGATATGCAGACCGATGCCGCCG 1037171 Query 205451 GAACACTTGGCGATCTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATC 205509 | || | ||| || || ||| ||||| || || |||||| || ||||||| || Sbjct 1037170 GCGGTTTTCGAGATTTGCGCACACGTCTTG-AGGGTATCGTAGATTCCGTCGATGGAGTC 1037112 Query 205510 GTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAA 205569 | |||| | ||||||| | ||||| | ||||| | | | |||||| |||| ||| Sbjct 1037111 CGCAGCCATGGCCACCAGAAAACACGACGACAGCTGGCCCTGGGGGGTGCCTGCGTTGAA 1037052 Query 205570 GAGCGTGGG 205578 ||| ||||| Sbjct 1037051 GAGGGTGGG 1037043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154812361840