Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 412 3e-110 seq2 132 5e-26 seq7 111 2e-19 >seq3 Length=2682169 Score = 412 bits (456), Expect = 3e-110 Identities = 646/915 (71%), Gaps = 17/915 (2%) Strand=Plus/Plus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || || ||| |||| ||||| || || || || || || ||| || ||| | Sbjct 1914849 TTCTGGTAGTCGGACACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTTC 1914908 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTG---CCGATCAGGTCGACG 132720 ||| || || |||||||||| | ||||||| ||||| | |||| || | || Sbjct 1914909 TCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGAGTTTCCGA---GGGCCACC 1914965 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779 ||||||| ||||||||| ||||| ||||| || ||||| | || || | | | ||||| Sbjct 1914966 AGCAGCCGGTCGGCCACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATG-CCCAG 1915024 Query 132780 CAGAC-GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838 ||||| ||| || ||||| ||||| || || ||||||||| | || || ||| | Sbjct 1915025 CAGACCGCAGGGG-AGCGCGTCGGTCAGGAACTCCTGCTCGATGCCAACGGCCTCGACAA 1915083 Query 132839 CGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAG 132898 | ||| || | | | ||||| | | | | ||| ||||| || || | Sbjct 1915084 TCACGTCCTCGACAATCTTCTTGGAGGGCCGGTTCTCGAGGTGCGAGAACAGCAGACAGG 1915143 Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958 ||||||| |||| |||||||| | ||| ||||| |||||| ||| |||| ||||| Sbjct 1915144 CAAAGTCCGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCGG 1915203 Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018 ||||||| || || || |||||||| || |||| ||| || ||| || || |||| || Sbjct 1915204 GCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCGGAGAAAAAGATGC 1915263 Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCC 133078 |||| ||||| || || || | || |||||||| || |||| || | | || ||||| Sbjct 1915264 CCTCCACGGCGGCAAAGGCAATGAGTCGCTCGCCAAAGGTGGACTCGTCGTCGGAGATCC 1915323 Query 133079 AGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 | |||||||| |||||||| | |||| ||| || || || ||||||||||| ||| Sbjct 1915324 ACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCGATGGCGTTGAAC- 1915382 Query 133139 AACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTC 133196 | | || ||| || | || | | ||| |||||||| || ||| || |||| Sbjct 1915383 -AGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTTTC 1915441 Query 133197 CGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTG 133256 |||||| | ||||||||| ||| || |||||||| |||||| |||||| |||| Sbjct 1915442 CGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTG 1915501 Query 133257 CACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAA 133316 ||| || | || ||||| ||||| || ||||||||||||||||| |||||| || Sbjct 1915502 CACCTCGCCGGAAAACCGCTCCACCAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCAAA 1915561 Query 133317 AAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTC 133373 |||||||||||||| |||||| ||||||| || ||| | || ||||||||| Sbjct 1915562 GAAGGCCAGCACGTGGGAGATGAAGAACCGCTCGTCGTTGTTGAGCCGGTTCTCCCAGTC 1915621 Query 133374 GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTT 133433 || | |||||||| || || | |||||| | ||||| |||||||||||||| || || Sbjct 1915622 GCCCATGTCCTTGCCGAGATCGATTTCCTCGGCCGTCCAGAACGACGCCTCGGCCTTCTT 1915681 Query 133434 GTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 |||||| ||| || || || || ||||| || | ||||||||| ||| |||| || Sbjct 1915682 GTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAACCGCCGGTGGTTCTC 1915741 Query 133494 GCGCAACAGCGGCTC 133508 | ||||||||| Sbjct 1915742 CTTGAGCAGCGGCTC 1915756 >seq2 Length=2949780 Score = 132 bits (146), Expect = 5e-26 Identities = 167/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 ||||||| || || || || || || ||||| ||||||||| |||| || ||| | ||| Sbjct 2456518 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCG 2456577 Query 38305 ACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | |||| | || || |||| ||||| ||||| |||||| | ||||| Sbjct 2456578 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 2456636 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| ||||| ||||| || |||| || || || ||||||||| Sbjct 2456637 CAGCGACTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAAC 2456696 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || ||||| |||| |||||| | |||| || Sbjct 2456697 ATCCAGAAGGAGTCCACTCTGCACCTGGTTCTGCGTCTCCGAGGAGG 2456743 >seq7 Length=1109975 Score = 111 bits (122), Expect = 2e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 ||||||| || || || || || || || || || || |||||| | || || ||| | Sbjct 1062554 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTT 1062613 Query 38302 CCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | |||| | || || |||| ||||| |||||||||||| | ||| Sbjct 1062614 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 1062672 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || ||||| || |||| || ||||| |||||| Sbjct 1062673 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 1062732 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| | || || ||| | || ||||| Sbjct 1062733 AACATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 1062770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172556165760