Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 170 2e-36 seq9 163 2e-34 >seq1 Length=4810746 Score = 170 bits (188), Expect = 2e-36 Identities = 564/867 (65%), Gaps = 20/867 (2%) Strand=Plus/Minus Query 551727 GGAACTCATGACGTAACTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACT 551786 |||||| || || ||||||| ||| | ||||||||| ||||| || || || Sbjct 4780568 GGAACTTTCGATGTCTCTCTTCTGTCTATTGAAGATGGTATCTTTGAGGTCAAGGCCACC 4780509 Query 551787 AGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTG 551844 ||| ||| | ||||| ||||| || || ||||| || |||| || | || | || Sbjct 4780508 GCTGGTGATACCCATCTCGGTGGTGAGGACTTTGACAACCGACTCGTGAACCAC--TTTG 4780451 Query 551845 TTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAA--AGCTCTTCG 551902 || | || || || ||||| |||| || | || || | ||| |||||| || Sbjct 4780450 TTCAGGAGTTCAAGCGAAAGCACAAGAAGGACATCTCGAC--CAACCAGCGAGCTCTCCG 4780393 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCAC 551962 || || |||| ||||| || |||| || ||| |||| || ||| | |||| || | Sbjct 4780392 ACGACTGCGAACCGCTTGTGAGCGAGCTAAGCGAACTCTCTCGTCTTCTGCTCAGACATC 4780333 Query 551963 TATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAA 552022 |||||| | || || | | ||||| ||||||| | || | || | | ||| Sbjct 4780332 CATTGAAATTGACTCTCTCTACGAGGGTATTGATTTCTACACCTCCATCACCCGAGCCCG 4780273 Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTT 552082 ||| || || | ||| |||||||| || || |||| || || || | ||| | Sbjct 4780272 ATTCGAGGAGCTCTGTCAGGATCTCTTCCGAGGCACCCTTGAGCCTGTTGAGAAGGTTCT 4780213 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 | || | ||||| || || | || | |||||||| ||||||||||| ||||| Sbjct 4780212 GAAGGACGCCAAGATGGACAAGGCTTCTGTCAACGAAATTGTTCTTGTTGGTGGCTCTAC 4780153 Query 552143 AAGAATTCCTAAAATTCGCGAA----ATGT-TAAGTTCTTATTTCAATGGTAAAAAATTA 552197 ||||||| || || ||| ||| | | ||| ||||| || || | || Sbjct 4780152 TCGAATTCC-CAAGGTCCAGAAGCTCGTGTCTGACTTC----TTCAACGGCAAGGAGTTG 4780098 Query 552198 AATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATT 552257 || | | | || || ||||||||||||||||| || || || | || || |||||| Sbjct 4780097 AACCGATCTATCAACCCTGATGAGGCTGTTGCCTACGGAGCTGCCGTCCAGGCCGCTATT 4780038 Query 552258 CTTTCTGGACAAAC-TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCT 552316 || ||||| | || | | ||| || | ||| | ||| | |||||| ||||||| Sbjct 4780037 CTGTCTGGTGACACTTCCTCCTCTACT-CAGGACATTCTGCTTCTTGATGTTGCTCCTCT 4779979 Query 552317 ATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTAC 552376 ||||||||| | || || | ||| ||| ||||||| || || ||| |||| | || Sbjct 4779978 CTCTCTTGGTATCGAGACTGCTGGTGGTGTTATGACCAAGCTCATCCCCCGAAACTCGAC 4779919 Query 552377 TATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTAC 552436 ||||| || || ||| || || || || | || || || | | |||| Sbjct 4779918 CATTCCCACCAAGAAGTCTGAGACCTTCTCCACCTACGCTGACAACCAGCCCGGTGTTCT 4779859 Query 552437 AATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTT 552496 || || | ||||| || || || || || || || || ||||| | || Sbjct 4779858 GATCCAGGTCTTTGAGGGTGAGCGAGCCCAGACCAAGGACAACAACATTCTTGGCAAGTT 4779799 Query 552497 TAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGA 552556 | | | ||||| |||||||||||||| || || || || ||||| || || ||||| Sbjct 4779798 TGAGCTTTCTGGTATCCCTCCTGCTCCTCGAGGTGTTCCTCAGATTGAGGTCACCTTCGA 4779739 Query 552557 TATCGATGCCAATGGAATTTTGAATGT 552583 | |||| ||||| |||||| | || || Sbjct 4779738 TGTCGACGCCAACGGAATTCTTAACGT 4779712 >seq9 Length=923155 Score = 163 bits (180), Expect = 2e-34 Identities = 560/868 (65%), Gaps = 22/868 (3%) Strand=Plus/Plus Query 551727 GGAACTCATGACGTAACTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACT 551786 |||||| || || |||| || ||| | ||||||||| ||||| || || || Sbjct 25908 GGAACTTTCGATGTCTCTCTCCTGTCTATTGAAGATGGTATCTTTGAGGTCAAGGCCACC 25967 Query 551787 AGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTG 551844 ||| || | ||||| ||||| || || ||||| || |||| || | || | || Sbjct 25968 GCTGGTGACACCCATCTCGGTGGTGAGGACTTTGACAACMGACTCGTGAACCAC--TTTG 26025 Query 551845 TTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAA--AGCTCTTCG 551902 || | || ||||| ||||| |||| || | || || | ||| |||||| || Sbjct 26026 TTCAGGAGTTTAAGCGAAAGCACAAGAAGGACATCTCGAC--CAACCAGCGAGCTCTCCG 26083 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCAC 551962 || || |||| || || || |||| || ||| |||| || ||| | |||| || | Sbjct 26084 ACGACTGCGAACCGCCTGTGAGCGAGCTAAGCGAACTCTCTCGTCTTCTGCTCAGACTTC 26143 Query 551963 TATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAA 552022 |||||| | || || | | ||||| ||||||| | || | || | | ||| Sbjct 26144 CATTGAAATTGACTCTCTCTACGAGGGTATTGATTTCTACACCTCCATCACCCGAGCCCG 26203 Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTT 552082 ||| || || | ||| |||||||| ||| || |||| || || || | ||| | Sbjct 26204 ATTCGAGGAGCTCTGTCAGGATCTCTTCAGAGGCACCCTTGAGCCTGTTGAGAAGGTTCT 26263 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 | || | ||||| || || || || | |||||||| ||||||||||| ||||| Sbjct 26264 GAAGGACGCCAAGATGGACAAGGCCTCTGTCAACGAAATTGTCCTTGTTGGTGGCTCTAC 26323 Query 552143 AAGAATTCCTAAAATTCGCGAAA--TGT---TAAGTTCTTATTTCAATGGTAAAAAATTA 552197 |||| || || | | ||| || | | ||||| ||| || || | | Sbjct 26324 TCGAATCCCCAAGGTCCA-GAAGCTYGTCTCTGACTTCTT----CAACGGCAAGGAGCTG 26378 Query 552198 AATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATT 552257 || | | || || |||||||||||||| || || || || | || || |||||| Sbjct 26379 AACCGATCCATCAACCCTGATGAGGCTGTTGCTTACGGWGCTGCCGTCCAGGCCGCTATT 26438 Query 552258 CTTTCTGGACAAACTGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTC 552315 || ||||| | ||| | |||| | | ||| | || | |||||| |||||| Sbjct 26439 CTGTCTGGTGACACT--TCGTCCTCTACCCAGGACATTCTGCTYCTTGATGTTGCTCCTC 26496 Query 552316 TATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTA 552375 | ||||||||| | || || | ||| ||| ||||||| || || ||| |||| | | Sbjct 26497 TCTCTCTTGGTATCGAGACTGCTGGTGGTGTTATGACCAAGCTCATCCCCCGAAACTCGA 26556 Query 552376 CTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTA 552435 | |||||| || || ||| || ||||| ||| | || || || ||| |||| Sbjct 26557 CCATTCCTACCAAGAAGTCTGAGACCTTCTCTACCTATGCTGAYAACCAGCCTGGTGTTC 26616 Query 552436 CAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTT 552495 || || | ||||| || || || || || || || || ||||||| | Sbjct 26617 TGATCCAGGTCTTTGAGGGTGAGCGAGCTCAGACCAAGGAYAACAACATTCTTGGTAAGT 26676 Query 552496 TTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCG 552555 || | | ||||| |||||||||||||| || || || || ||||| || || || | Sbjct 26677 TTGAGCTTTCTGGTATCCCTCCTGCTCCTCGAGGTGTTCCCCAGATTGAGGTCACCTTTG 26736 Query 552556 ATATCGATGCCAATGGAATTTTGAATGT 552583 || | || ||||| || ||| | || || Sbjct 26737 ATGTTGACGCCAACGGTATTCTTAACGT 26764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029293937504110