Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 313 4e-79 seq2 163 4e-34 seq5 109 8e-18 seq1 96.9 5e-14 >seq3 Length=2682169 Score = 313 bits (346), Expect = 4e-79 Identities = 415/566 (73%), Gaps = 10/566 (2%) Strand=Plus/Minus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||||||||| || |||| || ||||| || |||||||||| ||||| Sbjct 1915757 CGAGCCGCTGCTCAAGGAGAACCACCGGCGGTTTGTGCTCTTCCCCATCCAGTACCACGA 1915698 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || || ||||| |||||||| |||| | Sbjct 1915697 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCGTCGTTCTGGACGGCCGAGGAAATCGATC 1915639 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 ||||| |||| || | |||||| | ||| | | |||||||||| |||||| Sbjct 1915638 TCGGCAAGGACATGGGCGACTGGGAGAACCGGCTCAACAACGACGAGCGGTTCTTCATCT 1915579 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||| || ||||| ||| |||||| || |||||||| ||||||||||| | Sbjct 1915578 CCCACGTGCTGGCCTTCTTT-GCCGCCTCGGACGGCATCGTCAACGAGAACCTGGTGGAG 1915520 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || ||| ||||| || || ||||| | || ||||| ||||||||| Sbjct 1915519 CGGTTTTCCGGCGAGGTGCAGGCCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATG 1915460 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| |||||||||||||| ||||||||||| ||| |||||||||| Sbjct 1915459 ATGGAGAACATCCACTCGGAAACCTACTCGCTGCTGATCGACACATACATCAAGGACCCC 1915400 Query 1456072 GTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 ||| | ||| |||| || ||||||||| || | || | | | ||| ||||| Sbjct 1915399 AAGGAGC-GAACCTACCTGTTCAACGCCATCGAGACCATTCCCTGCATCAAGAAGAAGGC 1915341 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 |||||||||| | ||||||||| | | || | || || ||||| |||||| ||| | Sbjct 1915340 CGACTGGGCGCTCAAGTGGATCTCCGACGA-CGAGTCCAC-CTTTGGCGAGCGACTCATT 1915283 Query 1456191 GGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | |||||||| ||| ||||||||||||||||| ||| || | ||||||| |||||| Sbjct 1915282 GCCTTTGCCGCCGTGGAGGGCATCTTTTTCTCCGGCTCGTTTGCCTCCATCTTCTGGCTC 1915223 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| || ||||||||||| || Sbjct 1915222 AAGAAGCGAGGTCTCATGCCCGGCCT 1915197 Score = 136 bits (150), Expect = 6e-26 Identities = 236/338 (70%), Gaps = 10/338 (3%) Strand=Plus/Minus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACC 1456507 ||| ||||| ||||||||||||||||| | | || |||| ||| ||| || | Sbjct 1915162 GGTCTGCACACGGACTTTGCCTGTCTGCTGTTCTCGCACCTCGAGAACCGGCCCTCCAAG 1915103 Query 1456508 GACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAG 1456567 | | | || | | || ||||||||||| | |||||| | ||||| | | ||| Sbjct 1915102 AAGATTGTCGAGGACGTGATTGTCGAGGCCGTTGGCATCGAGCAGGAGTTCCTGACCGAC 1915043 Query 1456568 TCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATT 1456627 |||| || | || | ||||||||||||| ||||||||||||||||||||| || Sbjct 1915042 GCGCTCCCCTGCGGTCTGCTGGGCATGAACGCCAA-GCTCATGTGCCAGTACATTGAGTT 1914984 Query 1456628 TTGTCGCCGACCGCCTGCTCGCGGCGCTCGG---CTGCGGAGAAGCACTACCGGACGGCC 1456684 | || |||||||| ||||| | ||| ||||| || | ||| |||| | || Sbjct 1914983 T-GTGGCCGACCGGCTGCTGGTGGCCCTCGGAAACTCC----AAGGTCTACAACTCCACC 1914929 Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGC 1456744 ||||| ||| | |||||| |||||||| | |||||||||||||| |||||| Sbjct 1914928 AACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGCAAGACCAACTTCTTCGAGAAG 1914869 Query 1456745 CGCGTG-GCGAGTACGCCAAGGCCGGCGTCACCGCCAA 1456781 || ||| ||| ||| |||||||| |||| ||||| Sbjct 1914868 CGGGTGTCCGACTACCAGAAGGCCGGTGTCATGGCCAA 1914831 Score = 113 bits (124), Expect = 6e-19 Identities = 203/293 (69%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 1817497 CCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGGGCCA-CGTTCATGGTGTG 1817555 || |||| ||||||||||| ||| |||||||| ||| |||| || | | || | || Sbjct 1012799 CCCATGACGGGCTTGTTGGACTGGGGCGACACAATCTGCAGGGGCACCATGCACAG-CTG 1012857 Query 1817556 CGTCACCTCGGCGCGCGCGTC-TCAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTC 1817614 || || |||||| || | || || |||||||| ||||| | |||||| ||||| ||||| Sbjct 1012858 CGACAGCTCGGCTCGGGTCTCTTCGGACTGGGGAACATGCAAGTTCATTTCGTCTCCGTC 1012917 Query 1817615 AAAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCAT 1817674 || ||||| ||||||| |||||| | |||||| | || | ||| | ||||| Sbjct 1012918 GAAATCGGCGTTGTAGGGCGACGTGACCGACAGGTTCAGTCGGAAGGTCGAGTACGGCAT 1012977 Query 1817675 GGGCACCACCTTGTGCATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTTCATCAC 1817734 | | ||| ||| | |||||| | || || || ||||| ||||| | || Sbjct 1012978 GACCCGCACTCGGTGGGCCATCATGGACATTTTATGCAGCGACGGCTGTCGGTTGAACAG 1013037 Query 1817735 CACGGCGTCGCCGGCGCGCAGGTGACGCTCGACTGTCCACCCAATTTGCAGCG 1817787 ||||| |||| | | |||||| ||||| || |||| || ||||||| Sbjct 1013038 CACGGGGTCGTTGTCCATCAGGTGCCGCTCCACCTTCCAGCCGTACTGCAGCG 1013090 >seq2 Length=2949780 Score = 163 bits (180), Expect = 4e-34 Identities = 218/303 (72%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 |||||| | |||||| ||| ||| |||||| || | ||||| || | || || Sbjct 80529 ACCTACAACTACATGTCTCAGAAGTACTTCACCCATGCTTCTCCCACCCTGTACAACGCA 80470 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 ||||| || | || |||| |||||||| || || | ||||||||| ||| || ||| Sbjct 80469 GGCACCCCCCAGCCCCAGATGTCGTCGTGTTTCCTCGTCAACATGAAGGACGACTCCATC 80410 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || |||||||| ||||| |||||| || || ||||| |||||| | || || ||||| Sbjct 80409 GACGGCATCTACGACACTCTCAAGACTTGTGCTCTCATTTCCAAGTCCGCTGGAGGCATT 80350 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 ||| | || ||||| | || || | ||| ||||| | || || |||||||| Sbjct 80349 GGTCTGTCCATCCACAACATCCGAGCTACCGGCTCCTACATCGCTGGAACCAACGGAACC 80290 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||||||| | ||||||||||| || || | ||| |||| || || |||||||||||| Sbjct 80289 TCCAACGGTATCGTGCCCATGCTGCGAGTGTACAACAACACCGCTCGATACGTCGACCAG 80230 Query 260183 TGC 260185 || Sbjct 80229 GGC 80227 Score = 120 bits (132), Expect = 4e-21 Identities = 329/499 (66%), Gaps = 20/499 (4%) Strand=Plus/Minus Query 262922 TGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCA 262981 |||| |||||| |||| ||||| | ||||||||| ||| | || |||||||| || ||| Sbjct 79307 TGCGAAACTCGCTGCTGGTGGCCCCCATGCCCACCGCCTCCACCTCGCAGATTCTCGGCT 79248 Query 262982 ACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCG 263041 || |||| |||||| | ||| |||||| ||| | || || ||||| | |||| Sbjct 79247 TCAACGAGTGTTTCGAGCCCTACACCTCCAACATTTACTCTCGACGAGTGCTTGCTGGCG 79188 Query 263042 ACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGC 263101 | || | ||||||| | ||| ||||| | |||| | | ||| ||||||| Sbjct 79187 AGTTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTGGTTGAGGTCGGACTGTGGAATG 79128 Query 263102 CCGACTTTCGCGA-CCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAG 263160 ||| | || ||| || | || | | || || |||||| | | | || Sbjct 79127 A-GACCATGAAGAACCGAATCGTGGCCGACAACGGATCCGTGCAGAACATCCCCAACA-- 79071 Query 263161 GAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGT---GCCCAACCGG 263217 | || | || |||||| || | |||||||||||||||| | || || || Sbjct 79070 ----TCCCCCAGGAGATCAAGGACCTGTACAAGACCGTGTGGGAGATTTCGCAGAAGCGA 79015 Query 263218 GTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAAC 263277 | ||| || ||||| || ||||| | |||| | |||||| |||||| |||||| Sbjct 79014 AT---CATCGAGATGGCTGCTGACCGATCCCCCTTCATTGACCAGTCCCAGTCTCTCAAC 78958 Query 263278 CTGTACCTCGCCGACCCGACGGCCGAGAGCA---TCACGTCGATGCACGCCTATGCGTGG 263334 | || || ||||| || | | ||| |||| || |||||| ||| | ||| Sbjct 78957 ATCCACATCAAGGACCCCAC---CATGGGCAAGCTCACCTCCATGCACTTCTACGGCTGG 78901 Query 263335 CGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATT 263394 || |||||||| ||||||||||| ||||| ||| | | ||||| | |||| Sbjct 78900 AAGAAGGGTCTCAAGACCGGCATGTACTACCTGCGAACCATGGCTGCTGCTGCCCCCATC 78841 Query 263395 CAATTCACCGTCGATCAGG 263413 || |||||| |||| |||| Sbjct 78840 CAGTTCACCATCGACCAGG 78822 >seq5 Length=1963011 Score = 109 bits (120), Expect = 8e-18 Identities = 131/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 262117 CCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAA 262176 ||| ||||| ||||| |||| |||| | ||||||||| | |||| | ||| Sbjct 1037624 CCAGATCGAAACCGGAGGCCCCTTCATGCTGTACAAGGACAGCTGCAACGCAAAGTCCAA 1037683 Query 262177 CCAGCAGAACCTGGGCACCACGACAGAGGCCAACCTGTGCACCGAGATCGTCCAGTTTTC 262236 ||||||||||||||| |||| | | | ||||||||||||| || |||||||||| || Sbjct 1037684 CCAGCAGAACCTGGGAACCATCAAATCGTCCAACCTGTGCACGGAAATCGTCCAGTACTC 1037743 Query 262237 GTCGCCCACCGAGGCAAGTGTGTGCAACCTCTCGAGCGTGGCCCTGCCCAAGTTTGTC 262294 |||||| |||| ||||||||||| || |||||| ||||| |||||||| Sbjct 1037744 GTCGCCGGAAGAGGTGGCGGTGTGCAACCTGGCGTCCGTGGCTCTGCCGGAGTTTGTC 1037801 Score = 105 bits (116), Expect = 1e-16 Identities = 214/316 (68%), Gaps = 14/316 (4%) Strand=Plus/Plus Query 259874 GTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTC 259933 ||||||| ||| ||| || |||||| || |||||| || | ||||| ||| Sbjct 1036992 GTGCTCGACACGTACACCGCTCTGTCGCTGCGCAAGTTCACGCATGCCTCTCCCACCCTC 1037051 Query 259934 TTTAATGCCGGCACGCCGC---GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAG 259990 || || || ||||| || | ||| || | |||||||| |||||| ||| |||| Sbjct 1037052 TTCAACGCAGGCACCCCCCAGGGCCAGCTG---TCGTCGTGTTTTCTGGTGGCCATGGCT 1037108 Query 259991 GCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCG 260050 || || || ||||| || ||||| || || |||||| ||| |||| ||||| || | Sbjct 1037109 GCGGACTCCATCGACGGAATCTACGATACCCTCAAGACGTGTGCGCAAATCTCGAAAACC 1037168 Query 260051 GCCGGCGGCATCGGTTTTGCCGCA----CACAAGGTGCGCGCCGCGGGCGCCTACGTGGC 260106 ||||||||||||||| | ||| ||||| | || ||| |||||| | | Sbjct 1037169 GCCGGCGGCATCGGT----CTGCATATCCACAACATCCGAGCCAAGGGCGCTATTATTAC 1037224 Query 260107 GGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGC 260166 || | | || |||| ||| | ||||||||||| | || || ||| |||| || Sbjct 1037225 AGGGTCTCAAGGAAGATCCAGTGGCATCGTGCCCATGCTCAGAGTGTTCAACAACACCGC 1037284 Query 260167 GCGCTACGTCGACCAG 260182 | | ||||| |||||| Sbjct 1037285 GAGGTACGTGGACCAG 1037300 Score = 98.7 bits (108), Expect = 1e-14 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972 |||||||| ||||||||||| |||| ||||| | |||||| || || | || || |||| Sbjct 1038226 AGCATGGCATGCGCAACTCGCTGCTGGTGGCTCCCATGCCTACCGCTTCTACCTCCCAGA 1038285 Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGC 263032 |||| ||| ||| |||| |||||| | |||| |||||| ||| ||| || |||| Sbjct 1038286 TCCTCGGCCACAACGAGTGCTTCGAGCCCTACACGTCCAACATTTACCTGCGGCGAGTGC 1038345 Query 263033 TCTCGGGCGACTTTACCGTGGTCAACC 263059 | ||||| ||| |||||||||| Sbjct 1038346 AGGCCGGCGAGTTTCTGGTGGTCAACC 1038372 >seq1 Length=4810746 Score = 96.9 bits (106), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | |||||||||||||| |||||| |||||| || | | ||| Sbjct 2874431 TACTCTTCTTACATCTACAAGGTGCTGAAGCAGACCCACCCCGACACTGGT-----ATC- 2874378 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 |||| | ||||||| ||||||||||| || |||||||| || |||| || | | | Sbjct 2874377 TCCACCCGAGCCATGTCCATCATGAACTCTTTCGTCAACGATATCTTCGAGCGAGTTGCC 2874318 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || |||||| ||||| || || |||| ||| ||| | || |||||| Sbjct 2874317 ACTGAGGCCTCCAAGCTGGCCACCTACACCAAGAAGTCCACCATCACTTCTCGAGAGATC 2874258 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCC 725126 |||||||| || || || ||| | | ||| || ||||||| ||||||| Sbjct 2874257 CAGACCGCTGTCCGACTTATCCTCCCCGGAGAGCTGGCCAAGCACGCC 2874210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177807438378318