Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq3 111 5e-19 seq5 104 7e-17 >seq3 Length=2682169 Score = 111 bits (122), Expect = 5e-19 Identities = 397/607 (65%), Gaps = 19/607 (3%) Strand=Plus/Minus Query 443270 GCGGTTCGTCTTGTTCCCCGTTCAGCATCCCGACATCTACGACATGTACAA-ACGACAAG 443328 |||||| || | |||||| | ||| | | ||| |||| | |||||||| | | | | Sbjct 1915730 GCGGTTTGTGCTCTTCCCCATCCAGTACCACGAGATCTGGCAGATGTACAAGAAGGCC-G 1915672 Query 443329 TGGCCCAGTTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACG 443388 ||| ||| ||||| ||||| || |||||| ||||||| ||| ||| ||| | Sbjct 1915671 AGGCGTCGTTCTGGACGGCCGAGGAAATCGATCTCGGCAAGGACATGGGCGACTGGGAGA 1915612 Query 443389 AACGACTATCTAGCCATGAACGCGATTTCTTCAAATGCATCTTG---GCCTTCTTTGCAC 443445 | || || | | | || || ||||||| | | | || ||||||||||| Sbjct 1915611 ACCGGCTCAACAACGACGAGCGG---TTCTTCATCTCCCACGTGCTGGCCTTCTTTGCCG 1915555 Query 443446 CGAGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACA 443505 | ||||| |||||| ||||| |||||| ||| || | || ||| | | Sbjct 1915554 CCTCGGACGGCATCGTCAACGAGAACCTGGTGGAGCGGTTTTCCGGCGAGGTGCAGGCCC 1915495 Query 443506 CCGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCT 443565 |||||||| | |||||||| ||||| | ||||||||||| ||| | || || Sbjct 1915494 CCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAAACCT 1915435 Query 443566 ACAGTCAGTTGATCAAGACACTAATTCCGAACGAAGACGAACAGCGGTCC-ATCTTCTCA 443624 || | | ||||| | ||| || || || || | | |||| || | || ||| Sbjct 1915434 ACTCGCTGCTGATCGACACA-TACATC--AAGGACCCCAAGGAGCGAACCTACCTGTTCA 1915378 Query 443625 TCGT--TCATGACCACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGG--CT 443680 || || ||||| || |||||| | ||| | |||||| ||||| || Sbjct 1915377 ACGCCATCGAGACCATTCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAAGTGGATCT 1915318 Query 443681 CGAACGAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACT 443740 | |||| | || || ||| | ||||||||| | || ||||| | || || || | Sbjct 1915317 CCGACGACGAG-TC-CACCTTTGGCGAGCGACTCATTGCCTTTGCCGCCGTGGAGGGCAT 1915260 Query 443741 GTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACG 443800 || || |||| ||| ||||||||||||||| | || ||||| || || |||| || Sbjct 1915259 CTTTTTCTCCGGCTCGTTT-GCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCG 1915201 Query 443801 GTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCT 443860 | |||||||| ||||| || ||| || ||||||||| |||| ||||| |||| Sbjct 1915200 GCCTGACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACGGACTTTGCCT 1915141 Query 443861 GTCTTCT 443867 |||| || Sbjct 1915140 GTCTGCT 1915134 >seq5 Length=1963011 Score = 104 bits (114), Expect = 7e-17 Identities = 356/542 (66%), Gaps = 16/542 (3%) Strand=Plus/Plus Query 254972 GGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGC 255031 ||||| | || ||| || | |||||||||||| || | ||||| || || || || Sbjct 1037247 GGCATCGTGCCCATGCTCAGAGTGTTCAACAACACCGCGAGGTACGTGGACCAGGGTGGG 1037306 Query 255032 GGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGG 255091 ||| || || || ||||| ||||||| |||||||||||||||||||||||| || Sbjct 1037307 AACAAGCGTCCCGGCGCGTTTGCCATCTATCTGGAGCCGTGGCACGCCGACATT-CTCGA 1037365 Query 255092 TTTTTACTGCTGTCCGACAAGACC--GGCACCGAGGAGCTGATCGCCCGCGACATCTACA 255149 |||| | | | || || ||| || |||| ||| | ||||| ||| | | | Sbjct 1037366 TTTTCTC-AATCTGCGGAAAAACCATGGAGCCGAAGAGAACAGAGCCCGGGACCTGTTCT 1037424 Query 255150 CCGCTGTCT-GGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGC 255208 ||| | | ||||| ||| ||||| ||| || || || || | ||| | ||| Sbjct 1037425 ACGCATTGTGGGTGC-CCGACCTGTTCATGAAGCGGGTCGAGCGGGGCGAAAAGTGGTCG 1037483 Query 255209 CTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAA 255268 | | |||||||| | || || || | ||| ||||| |||||||||| || Sbjct 1037484 TTGTTCTGTCCCAAGAAGGCTCCGGGACTGGAAGACGTGTGGGGCCCCGAGTTTGAACAA 1037543 Query 255269 CTGTATCTGGAGTACGAGCGTGCCGGCCGGTTCGTACGCCAAG-TGCCCGCGAAGAAGAT 255327 ||| |||||||||| |||| || | ||||| || | ||| || || | Sbjct 1037544 AAGTACGAGGAGTACGAGAAAAGGGGCCTGTAC-AACGCCCAGATCAACGCCCAGGAGCT 1037602 Query 255328 CTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGA 255387 | || |||| || | ||| | ||||||||| || ||| | || |||| || Sbjct 1037603 GTTCAAGGCGATTCTGACGAGCCAGATCGAAACCGGAGGCCCCTTCATGCTGTACAAGGA 1037662 Query 255388 CCACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGAT--ACGCGGCTCGAACCTG 255445 | | |||||| ||| ||||| | ||| || || || | || || |||||| Sbjct 1037663 CAGCTGCAACGCAAAGTCCAACCAGCAGAACCTGGGAACCATCAAATCG--TCCAACCTG 1037720 Query 255446 TGCACCGAGATTACGT--TGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGT 255503 ||||| || || ||| | || |||| || |||||||||| || |||||| |||||| Sbjct 1037721 TGCACGGAAAT--CGTCCAGTACTCGTCGCCGGAAGAGGTGGCGGTGTGCAACCTGGCGT 1037778 Query 255504 CC 255505 || Sbjct 1037779 CC 1037780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335206328355