Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 116 5e-21 >seq3 Length=2682169 Score = 116 bits (128), Expect = 5e-21 Identities = 342/523 (65%), Gaps = 22/523 (4%) Strand=Plus/Plus Query 122380 ACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 122439 ||||||||||| |||||||||||||| || | || ||||| ||||| ||||| || Sbjct 1914864 ACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTTCTCCATGAAGTCGAAG 1914923 Query 122440 GGATTCTTCGCGTTCCAAA--TGGGTGGCACC-----CCAACTTGTTTGAGGAGACGATC 122492 || || | | ||| | | | || | || ||| | || || || || Sbjct 1914924 GGGTTGGTGGAGTTGTAGACCTTGGAGTTTCCGAGGGCCACC-------AGCAGCCGGTC 1914976 Query 122493 CGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGG 122552 | |||| |||||||||||| | |||| || | |||||| || | || || || Sbjct 1914977 GGCCACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCCAGCAGACCGCAGGG 1915036 Query 122553 GAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGAT 122612 ||| ||||| | |||| | | ||| || |||| ||||| | | | | | || Sbjct 1915037 GAGCGCGTCGGTCAGGAACTCCTGCTCGATGCCAACGGCCTCGACAATCACGTCCTCGAC 1915096 Query 122613 AGTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTCCACGGCAAACTCCTGGT 122671 | | | | | ||| | || | | | || | ||| ||| |||||| ||| || Sbjct 1915097 AATCTTCTTGGAGGGCCGGTT-CTCGAGGTGCGAGAACAGCAGACAGGCAAAGTCCGTGT 1915155 Query 122672 GGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCC 122731 | |||||||| |||||||| || || || || |||||| || || ||||||||||| | Sbjct 1915156 GCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCTC 1915215 Query 122732 GCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACG 122791 ||||||| | ||| | || | | || || |||||||| ||||| |||||||| | Sbjct 1915216 GCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCGGAGAAAAAGATGCCCTCCACGGCGG 1915275 Query 122792 CAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATTTCATTG 122848 |||| |||| || || ||| | |||| | |||| | || | ||| || | | Sbjct 1915276 CAAAGGCAATGAGTCGCTCGCCAAAGGTG---GACTCGTCGTCGGAGATCCACTTGAGCG 1915332 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 |||| | |||||||||| || || || | || | |||||| Sbjct 1915333 CCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCGATGGC 1915375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031693834400