Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 156 5e-33 seq5 134 2e-26 >seq3 Length=2682169 Score = 156 bits (172), Expect = 5e-33 Identities = 350/518 (68%), Gaps = 12/518 (2%) Strand=Plus/Plus Query 129737 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 129796 |||||||||||||||||||| ||||| ||| ||| ||| |||||||| || || || Sbjct 1914864 ACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTTCTCCATGAAGTCGAAG 1914923 Query 129797 GGGTTCTTTGAGTTCCAAATTGCTGGCACT--CCAATCTGTTTGAGGAGACGATCCGAGA 129854 ||||| | ||||| | | || | | | || | || || || || | | Sbjct 1914924 GGGTTGGTGGAGTTGTAGAC--CTTGGAGTTTCCGAGGGCCACCAGCAGCCGGTCGGCCA 1914981 Query 129855 CGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGAGCG 129914 | |||||||||||| |||| || || |||||| || | || || ||||||| Sbjct 1914982 CAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCCAGCAGACCGCAGGGGAGCG 1915041 Query 129915 CGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCT 129974 |||| | |||| ||| ||| ||| | || || || | | | | | | ||| Sbjct 1915042 CGTCGGTCAGGAACTCCTGCTCGATGCCAACGGCCTCGACAATCACGTCCTCGACAATCT 1915101 Query 129975 CCGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTCCTGGTGGAGA 130033 | || || | || | | | || | ||| || |||||| ||| ||| ||| Sbjct 1915102 TCTTGGAGGGCCGGTT-CTCGAGGTGCGAGAACAGCAGACAGGCAAAGTCCGTGTGCAGA 1915160 Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| ||||||||||| || || |||||| ||| || ||||||||||| |||||| Sbjct 1915161 CCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCTCGCTTC 1915220 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | ||| ||||| ||||| ||||| |||||||| || || Sbjct 1915221 TTGAGCCAGAAGATGGAGGCAAACGAGCCGGAGAAAAAGATGCCCTCCACGGCGGCAAAG 1915280 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACT--TTGTATCA-AACCACTTCATCGCCCAC 130210 |||| ||| ||||| |||||| ||||| | || | | |||||| | |||||| Sbjct 1915281 GCAATGAGTCGCTCGCCAAAGG---TGGACTCGTCGTCGGAGATCCACTTGAGCGCCCAG 1915337 Query 130211 TGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | ||||| |||| ||| || || | ||||| ||| || Sbjct 1915338 TCGGCCTTCTTCTTGATGCAGGGAATGGTCTCGATGGC 1915375 >seq5 Length=1963011 Score = 134 bits (148), Expect = 2e-26 Identities = 557/870 (64%), Gaps = 9/870 (1%) Strand=Plus/Minus Query 118694 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 118753 |||| ||| || || || | |||||||| || ||||| | ||| ||| | Sbjct 1037801 GACAAACTCCGGCAGAGCCACGGACGCCAGGTTGCACACCGCCACCTCTTCCGGCGACGA 1037742 Query 118754 GTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 118813 ||||| | ||||||||||||| ||| || || ||||| |||| ||||| || || Sbjct 1037741 GTACTGGACGATTTCCGTGCACAGGTTGGACGATTTGATGGTTCCCAGGTTCTGCTGGTT 1037682 Query 118814 TGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGA 118873 ||||||| ||| || |||||||| |||||| | || || || || | ||| Sbjct 1037681 GGACTTTGCGTTGCAGCTGTCCTTGTACAGCATGAAGGGGCCTCCGGTTTCGATCTGGCT 1037622 Query 118874 CTTGAGAATAGCCTTCCAGACATCGGCAGC-TGGCACAGTGGCGTTGG-CTCGCCCCTCT 118931 | | ||||| ||||| | | || || | | | | ||||||| | |||||| | Sbjct 1037621 CGTCAGAATCGCCTTGAACAGCTCCTGGGCGTTGATCTG-GGCGTTGTACAGGCCCCTTT 1037563 Query 118932 TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGT 118991 || ||||||| ||| ||||||||| ||| | ||| || || || Sbjct 1037562 TC-TCGTACTCCTCGTACTTTTGTTCAAACTCGGGGCCCCACACGTCTTCCAGTCCCGGA 1037504 Query 118992 GCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 119051 ||||| | || ||||| | ||||| | | ||| ||| |||||||||||||| ||| Sbjct 1037503 GCCTTCTTGGGACAGAACAACGACCACTTTTCGCCCCGCTCGACCCGCTTCATGAACAGG 1037444 Query 119052 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 119111 || || | ||| | || |||| || ||||| | ||||| | || || || Sbjct 1037443 TCGGGCACCCACAATGCGTAGAACAGGTCCCGGGCTCTGTTCTCTTCGGCTCCATGGTTT 1037384 Query 119112 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 119171 |||| | | ||| || | || || ||||||||||| ||||| || | || | Sbjct 1037383 TTCCGCAGATTGAGAAAATCGAGAATGTCGGCGTGCCACGGCTCCAGATAGATGGCAAAC 1037324 Query 119172 GACCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGA 119228 | || ||| ||| |||||| || |||||||| ||| ||| || || | Sbjct 1037323 GCGCCGGGACGCTTGTTCCCACCCTGGTCCACGTACCTCGCGGTGTTGTTGAACACTCTG 1037264 Query 119229 AGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCT 119288 ||||| || | ||| ||| |||| || | | ||| |||| || |||||| Sbjct 1037263 AGCATGGGCACGATGCCACTGGATCTTCCTTGAGACCCTGTAATAATAGCGCCCTTGGCT 1037204 Query 119289 CTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCC 119348 | || | |||||| |||| ||| || || || || || ||||||||||| ||| | Sbjct 1037203 CGGATGTTGTGGATATGCAGACCGATGCCGCCGGCGGTTTTCGAGATTTGCGCACACGTC 1037144 Query 119349 GTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTC 119408 |||| | ||||||| || ||||| ||||| | | || | || || || | Sbjct 1037143 TTGAGGGTATCGTAGATTCCGTCGATGGAGTCCGCAGCCATGGCCACCAGAAAACACGAC 1037084 Query 119409 GACATTTGAGGCCT-GGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACAT 119467 |||| || | ||| ||| || || ||||||||||| || || | || || ||||| | Sbjct 1037083 GACAGCTG-GCCCTGGGGGGTGCCTGCGTTGAAGAGGGTGGGAGAGGCATGCGTGAACTT 1037025 Query 119468 ACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACC 119527 | | |||| | ||| || || | || || ||||| || ||||| || || Sbjct 1037024 GCGCAGCGACAGAGCGGTGTACGTGTCGAGCACCTTGGCGATGTCGTCTCCGTGGATCCC 1036965 Query 119528 GATCGAGACCCGCATAAACATGTATTGGGG 119557 | | || ||||| | ||||| ||| || Sbjct 1036964 CAGAGCCACGCGCATGAGCATGTGTTGAGG 1036935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434898512840