Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 288 1e-72 seq5 199 4e-46 >seq2 Length=2949780 Score = 288 bits (318), Expect = 1e-72 Identities = 445/629 (71%), Gaps = 10/629 (2%) Strand=Plus/Minus Query 53170 TGGTGAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-- 53227 || ||||| |||||| | | ||||||| || | | ||||||||||| |||||| Sbjct 80605 TGCTGAGAGACCTCAGCAGATGATCATGCGAGTGTCTGTCGGTATCCACGGCGACGACAT 80546 Query 53228 TACACGCG-TGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCAC 53286 | | || | | || ||||| ||| ||| ||| || |||||||| || || || | Sbjct 80545 TGCCCGAGCTATC---GAGACCTACAACTACATGTCTCAGAAGTACTTCACCCATGCTTC 80489 Query 53287 GCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGC 53346 || ||||||| |||||| || || || || ||||||||| || ||||| || Sbjct 80488 TCCCACCCTGTACAACGCAGGCACCCCCCAGCCCCAGATGTCGTCGTGTTTCCTCGTCAA 80429 Query 53347 GATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTC 53406 |||||||| ||||| ||||||||||||||||| || |||||| ||||| | ||| || Sbjct 80428 CATGAAGGACGACTCCATCGACGGCATCTACGACACTCTCAAGACTTGTGCTCTCATTTC 80369 Query 53407 CAAGTGGTCGGGTGGTATCGG--TATCCACTGCTCGAACGTCCGTGCGAACGGCACACCA 53464 ||||| | || || || || | |||| | | | ||| |||| || | |||| | Sbjct 80368 CAAGTCCGCTGGAGGCATTGGTCTGTCCA-TCCAC-AACATCCGAGCTACCGGCTCCTAC 80311 Query 53465 ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAAC 53524 ||| || || ||||| | || | || |||||||| ||||| || || | ||||||| Sbjct 80310 ATCGCTGGAACCAACGGAACCTCCAACGGTATCGTGCCCATGCTGCGAGTGTACAACAAC 80251 Query 53525 ACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTC 53584 || || || |||||| ||||||| || ||||| || | || ||||| ||||| Sbjct 80250 ACCGCTCGATACGTCGACCAGGGCGGCAACAAGCGACCCGGAGCCTTTGCCATGTACCTG 80191 Query 53585 GAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAA 53644 ||||| ||||||| |||| | | ||||| ||||||||| ||| || ||| | || Sbjct 80190 GAGCCCTGGCACGACGACGTCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGTAAGGAG 80131 Query 53645 GAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAG 53704 ||||| || ||| || ||||| ||||| ||||| || ||||| |||||| | Sbjct 80130 GAGATTCGAGCCCGAGATCTGTTCCTGGCTCTCTGGATCCCCGACCTGTTCATGGAGCGA 80071 Query 53705 GTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGT 53764 || ||| || ||| |||||| ||| |||||||| |||||||| |||||||| | | Sbjct 80070 GTCGAGCAGAACGCCGAGTGGACCCTCATGTGCCCCAACGAGTGTCCCGGCCTTGATGAC 80011 Query 53765 GTCTACGGTGAGGAGTTTAACGAGATGTA 53793 |||||||| || ||||| || || |||| Sbjct 80010 GTCTACGGCGACGAGTTCAAGCAGCTGTA 79982 Score = 158 bits (174), Expect = 1e-33 Identities = 304/445 (68%), Gaps = 5/445 (1%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || ||||| ||||| ||||| || ||||| ||||| || || | ||||| | ||| | Sbjct 79305 CGAAACTCGCTGCTGGTGGCCCCCATGCCCACCGCCTCCACCTCGCAGATTCTCGGCTTC 79246 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| ||||||| ||| || || || || || ||| Sbjct 79245 AACGAGTGTTTCGAGCCCTACACCTCCAACATTTACTCTCGACGAGTGCTTGCTGGCGAG 79186 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || ||||| || ||||||||||| || || |||||| | Sbjct 79185 TTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTGGTTGAGGTCGGACTGTGGAATGAG 79126 Query 55664 CAGATCAAGA-CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCC 55719 || |||| | || || ||| || || ||||| ||||| | | || || Sbjct 79125 ACCATGAAGAACCGA-ATCGTGGCCGACAACGGATCCGTGCAGAACATCCCCAACATCCC 79067 Query 55720 TCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGA 55779 | | ||||||| | ||| ||| |||||||||||| | |||||| | | || || Sbjct 79066 CCAGGAGATCAAGGACCTGTACAAGACCGTGTGGGAGATTTCGCAGAAGCGAATCATCGA 79007 Query 55780 CATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGA 55839 ||| |||||| || | | ||| ||||||||||||||||| |||||| ||| | Sbjct 79006 GATGGCTGCTGACCGATCCCCCTTCATTGACCAGTCCCAGTCTCTCAACATCCACATCAA 78947 Query 55840 GAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAA 55899 | | || | ||| |||| | | ||| |||||||| ||||| ||||||||||| ||||| Sbjct 78946 GGACCCCACCATGGGCAAGCTCACCTCCATGCACTTCTACGGCTGGAAGAAGGGTCTCAA 78887 Query 55900 GACGGGTATGTACTATCTGCGGACC 55924 ||| || |||||||| ||||| ||| Sbjct 78886 GACCGGCATGTACTACCTGCGAACC 78862 >seq5 Length=1963011 Score = 199 bits (220), Expect = 4e-46 Identities = 514/775 (66%), Gaps = 10/775 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 |||||||||| || |||| |||||||| |||||| | | || | || |||||| Sbjct 1036948 TCATGCGCGTGGCTCTGGGGATCCACGGAGACGACATCGCCAAGGTGCTCGACACGTACA 1037007 Query 53253 ACTTAATGA-GC--CAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 | || || | |||| | ||||| ||| | || ||||| |||||||| || | Sbjct 1037008 CCGCTCTGTCGCTGCGCAAGTTC---ACGCATGCCTCTCCCACCCTCTTCAACGCAGGCA 1037064 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | || ||| ||||| || || |||||||| ||| | ||||| ||||||| Sbjct 1037065 CCCCCCAGGGCCAGCTGTCGTCGTGTTTTCTGGTGGCCATGGCTGCGGACTCCATCGACG 1037124 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | |||||||| || |||||| |||||| || ||||| || | || || |||||| Sbjct 1037125 GAATCTACGATACCCTCAAGACGTGTGCGCAAATCTCGAAAACCGCCGGCGGCATCGGTC 1037184 Query 53430 TCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 | || | ||| |||| || || ||| | || | ||| | | || || Sbjct 1037185 TGCATATCCACAACATCCGAGCCAAGGGCGCTATTATTACAGGGTCTCAAGGAAGATCCA 1037244 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 ||| |||||||| |||||| | || ||||||||||| || ||||||| ||||||||| Sbjct 1037245 GTGGCATCGTGCCCATGCTCAGAGTGTTCAACAACACCGCGAGGTACGTGGACCAGGGTG 1037304 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | ||||| || |||| |||||||| || ||||||||||||||||||||| | | Sbjct 1037305 GGAACAAGCGTCCCGGCGCGTTTGCCATCTATCTGGAGCCGTGGCACGCCGACATTCTCG 1037364 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-T 53668 | |||||| | ||||| || || || | |||||||| | ||| |||||||| | Sbjct 1037365 ATTTTCTCAATCTGCGGAAAAACCATGGAGCCGAAGAGAACAGAGCCCGGGACCTGTTCT 1037424 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTAC 53728 || || ||||| | || ||||| |||||| | ||| ||| || ||| |||||| Sbjct 1037425 AC-GCATTGTGGGTGCCCGACCTGTTCATGAAGCGGGTCGAGCGGGGCGAAAAGTGGTCG 1037483 Query 53729 CTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAG 53788 || | || || || || || || || | | || | || |||||| | | Sbjct 1037484 TTGTTCTGTCCCAAGAAGGCTCCGGGACTGGAAGACGTGTGGGGCCCCGAGTTTGAACAA 1037543 Query 53789 ATGTATCGGACGTACGCAGTTCA-GGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGT 53847 | ||| | ||||| || | ||||| ||||| || |||| || | ||| | Sbjct 1037544 AAGTACGAGGAGTACG-AGAAAAGGGGCCTGTACAACGCCCAGATCAACGCCCAGGAGCT 1037602 Query 53848 ATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA 53907 | | || || || | ||||||| | || || ||| || | |||| |||||||| Sbjct 1037603 GTTCAAGGCGATTCTGACGAGCCAGATCGAAACCGGAGGCCCCTTCATGCTGTACAAGGA 1037662 Query 53908 TTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 ||||| ||| ||||||| ||||| | || |||||||||| |||| Sbjct 1037663 CAGCTGCAACGCAAAGTCCAACCAGCAGAACCTGGGAACCATCAAATCGTCCAAC 1037717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215733232200