Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 280 2e-70 seq7 187 3e-42 seq5 131 2e-25 seq1 87.8 2e-12 >seq2 Length=2949780 Score = 280 bits (310), Expect = 2e-70 Identities = 1133/1758 (64%), Gaps = 59/1758 (3%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || ||||| ||||||||||| |||||||| ||||||||||||||||| | |||||| || Sbjct 78863 GTTCGCAGGTAGTACATGCCGGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAG 78922 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||||||| | | ||||||| || ||| |||||| |||||||| ||||| ||| Sbjct 78923 GTGAGCTTGCCCATGGTGGGGTCCTTGATGTGGATGTTGAGAGACTGGGACTGGTCAATG 78982 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 || | || || || ||||| || || ||| ||| || | ||| ||||| || || Sbjct 78983 AAGGGGGATCGGTCAGCAGCCATCTCGATGATTCGCTTCTGCGAAATCTCCCACACGGTC 79042 Query 80218 CGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGA---TTTTGCACACTGCCACCG 80271 |||| |||| | ||||| || |||| | || ||||| || | Sbjct 79043 TTGTACAGGTCCTTG---ATCTCCTGGGGGATGTTGGGGATGTTCTGCACGGATCCGTTG 79099 Query 80272 TCCTTTACAATTTGATTTTTCAAT-TCAGACGTCCAGACACCAAGCTTGTGCAGATCTTT 80330 || || ||| | || |||| || | |||| | || | || ||| || || Sbjct 79100 TCGGCCACGATTCGGTTCTTCATGGTCTCAT-TCCACAGTCCGACCTCAACCAGGTCCTT 79158 Query 80331 CACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA-TACA 80386 | || | | ||| |||| || |||| || || || || || ||| || | Sbjct 79159 GAGCAGCCAGGGGTTGACAATCTGGA---ACTCGCCAGCAAGCACTCGTCG-AGAGTAAA 79214 Query 80387 GGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCG 80446 ||| | ||||| ||||| || ||||||| ||||| ||||| | ||| || | Sbjct 79215 TGTTGGAGGTGTAGGGCTCGAAACACTCGTTGAAGCCGAGAATCTGCGAGGTGGAGGCGG 79274 Query 80447 TCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATAT---CCTCGC 80503 | ||||| ||| | |||| ||| || || |||| ||| |||| |||| | ||| | Sbjct 79275 TGGGCATGGGGGCCACCAGCAGCGAGTTTCGCATTCCGGTCTTCATGATCTTGGCCTTGA 79334 Query 80504 GCAAATCTGACCAAAAATCAA--CCCCAACGCTGTGACC--CCACATGTCGTGCTGCAAG 80559 | ||| | || | || | | | | || || ||||| || ||||| | Sbjct 79335 G---ATC-GTCCCACTCCCAGAGCTCGGAGGGAGTCACGTTCCACAGATCAAACTGCAGG 79390 Query 80560 ATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGC 80619 |||| || || ||||| ||| ||| |||||||| | ||| ||| ||||| | Sbjct 79391 TCACCCTTGGAGGCAGGAGAGCCCTGGAAGGTCTCGTAGGCGCCGTCCTCAAGGGCCATC 79450 Query 80620 TCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA-CACC 80678 || | || || || ||| |||| || ||| ||| |||| |||| | | | Sbjct 79451 TCGTAGGAGGCCTCAACGGCTCCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTC 79510 Query 80679 GCGCGCCTG-TGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCT 80737 | |||| | || | || || | | | | |||||| ||||||||| |||| Sbjct 79511 TTG-GCCTCCTCGGAC-TCAAAGGGAAGTCGGAGGGCCATGAAAGTGTCAGCCAGACCCT 79568 Query 80738 GAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGT 80797 | || || | || || || ||||| ||| |||| || || |||||| || | |||| Sbjct 79569 GGACACCCAGAGCAATGGGTCGGTGTCGCATGTTGGACTTCTTGGCCTCGGGGACGGGGT 79628 Query 80798 AAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAA 80857 | |||| ||||||| | ||| ||||| || || ||| | || ||| || | Sbjct 79629 AGTAGTTTCGGTCGATGATGGCGTTGAGGTTTCGCACAATCACCTTGGCAATATCGTGCA 79688 Query 80858 GTTTCTGAAAGTCGAA-------TTGGT-TCCCCT----TCACAAATGCCGGAAGGCTCA 80905 | |||| |||||| | ||||| || || | ||||| | || || | Sbjct 79689 GCTTCTTGAAGTCGTAGAACGAGTTGGTCTCGTCTCGAGTGACAAAAGTAGGCAGCGCAA 79748 Query 80906 GGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGC 80965 ||| ||||| ||||| ||||||||||| |||| | | ||||||| || || || Sbjct 79749 TGGAGGCCAGGTTGCAGACGGCCACCTCGTCAGGAGACGAGTACTCGACAATCTCGCAGC 79808 Query 80966 ACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGT 81025 ||| || || ||||| || ||||||||||| |||||||| ||||| |||||| | || Sbjct 79809 ACAGGTTGGACGACTTGATAGTACCCAGGTTCTTCTGGTTGGACTTTCGGTTGCAGGAGT 79868 Query 81026 CCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAA 81085 |||||||| |||| | ||| | |||| |||| ||| | | || ||| || ||| | Sbjct 79869 CCTTGTAGAGCATGAAGGGGTTGCCGGACTCGGTCTGACAGTCCAGAATGTGGTACCACA 79928 Query 81086 TCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCT 81144 || | || || ||| | ||| || | | |||| |||| |||| Sbjct 79929 GCTTCTGGGCGGGGATGGTTCGTCGGCCTCGGCCCTCCTTCTCGTACTGCTCGTACAGCT 79988 Query 81145 TCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204 | | ||||| | | |||| | ||| ||| | || |||||||| |||||||| ||| Sbjct 79989 GCTT-GAACTCGTCGCCGTAGACGTCATCAAGGCCGGGACACTCGTTGGGGCACATGAGG 80047 Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264 ||| |||| || | ||| || || |||||| ||| ||||||||||| || | Sbjct 80048 GTCCACTCGGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCAGAGAGCCAGG 80107 Query 81265 AACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCC 81324 ||||| || ||| || |||||| | ||| ||||| |||| |||| || || Sbjct 80108 AACAGATCTCGGGCTCGAATCTCCTCCTTACCGTGGTTCTTTCGCAGCTCGCAGAACTCG 80167 Query 81325 ATGATGTCCGCATGCCATGGCTCCAGATACACGGC----GATC--GACCCCTTGCGACGG 81378 | || ||| | ||||| |||||||| |||| ||| | || | | |||| | Sbjct 80168 AAGACGTCGTCGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGTCGCTTG---TTG 80224 Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 || ||||||| |||||| || || || ||| | || |||| ||| || | |||||| Sbjct 80225 CCGCCCTGGTCGACGTATCGAGCGGTGTTGTTGTACACTCGCAGCATGGGCACGATACCG 80284 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAA 81498 | || ||||| || || |||| || || | || || | ||| ||| || Sbjct 80285 TTGGAGGTTCCGTTGGTTCCAGCGATGTAGGAGCCGGTAGCTCGGATGTTGTGGATGGAC 80344 Query 81499 AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATT 81558 ||||| ||||| || | |||| ||||| ||||||| || | || || || || Sbjct 80345 AGACCAATGCCTCCAGCGGACTTGGAAATGAGAGCACAAGTCTTGAGAGTGTCGTAGATG 80404 Query 81559 CCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCT-TTT 81617 || |||||| || | ||||||| | | |||||| |||||||| ||||| Sbjct 80405 CCGTCGATGGAGTCGTCCTTCATGTTGACGAGGAAACACGACGACATCTG-GGGCTGGGG 80463 Query 81618 TGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTC 81677 | ||| || ||| |||| || || | || || |||| || | ||||| || Sbjct 80464 GGTGCCTGCGTTGTACAGGGTGGGAGAAGCATGGGTGAAGTACTTCTGAGACATGTAGTT 80523 Query 81678 ATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAA 81737 ||||| || | | || | ||| ||||| ||||| ||||||| || || ||||| | Sbjct 80524 GTAGGTCTCGATAGCTCGGGCAATGTCGTCGCCGTGGATACCGACAGACACTCGCATGAT 80583 Query 81738 CATGTACTGGGGCGTCTC 81755 ||| | ||| || |||| Sbjct 80584 CATCTGCTGAGGTCTCTC 80601 Score = 168 bits (186), Expect = 8e-37 Identities = 173/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 ||||||||||||||||||| ||||| |||||||| || || || ||||| ||||| | Sbjct 2456518 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCG 2456577 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | ||||| || | ||| | || || |||||||||||||| ||||| || ||||||| Sbjct 2456578 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGC 2456637 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 |||| || || || || || ||||| |||||||| | || || || | ||||| || Sbjct 2456638 AGCGACTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAACA 2456697 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || || ||||||| || || || Sbjct 2456698 TCCAGAAGGAGTCCACTCTGCACCTGGTTCTGCGTCTCCGAGGAGG 2456743 >seq7 Length=1109975 Score = 187 bits (206), Expect = 3e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||||||||| |||||||| |||||||| || |||||||| ||||| Sbjct 1062555 AATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTC 1062614 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | ||| | || || |||||||||||||||||||| || ||||| Sbjct 1062615 CGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCA 1062674 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || || || |||||||| |||||||| | || ||||| | ||||| || Sbjct 1062675 GCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAA 1062734 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||||| || |||| || || ||||| Sbjct 1062735 CATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGTGG 1062782 >seq5 Length=1963011 Score = 131 bits (144), Expect = 2e-25 Identities = 260/387 (67%), Gaps = 30/387 (8%) Strand=Plus/Minus Query 80703 CAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTG 80762 || || || | |||| |||||||| ||||| ||||| ||||| | ||| ||||| || || Sbjct 1038008 CATGCGCAGCTTCATAAACACGTCTGCCAGACCCTGCACGCCCACGGCAATCGGACGATG 1037949 Query 80763 GCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTT 80822 ||||||||| || || |||||| | ||||| |||| ||||||| || ||| Sbjct 1037948 GCGCTTGTTGGACGTTTCTGCCTCCTTGACGGGGTAGCAGTTGGCCTCGATGATGCTGTT 1037889 Query 80823 CAGGTTGCGTGTAACAACCCGTGTAACA---TCATGAAGTTTCTGAAAGTCGAAT----- 80874 ||||| || || | || | || | ||| |||| ||||| | | Sbjct 1037888 GAGGTTTCGCGTCATGT---GTTTGACGGTCTTATGCAGTTCTCCAAAGTTGTAGGACCC 1037832 Query 80875 -----TGGTT--------CCCCTTCA------CAAATGCCGGAAGGCTCAGGGACGCCAG 80915 ||||| | |||| | |||| |||| || || ||||||||| Sbjct 1037831 TGCGGTGGTTTTGTCGCTCTCCTTGAGCTGGACAAACTCCGGCAGAGCCACGGACGCCAG 1037772 Query 80916 ATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGA 80975 |||||||| ||||||||||| | | ||| ||||||||||||||||| || || Sbjct 1037771 GTTGCACACCGCCACCTCTTCCGGCGACGAGTACTGGACGATTTCCGTGCACAGGTTGGA 1037712 Query 80976 AGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCA 81035 || || || || |||||||| | |||||| ||||| |||||||| ||||||||| Sbjct 1037711 CGATTTGATGGTTCCCAGGTTCTGCTGGTTGGACTTTGCGTTGCAGCTGTCCTTGTACAG 1037652 Query 81036 CATGTACGGGGTACCGGTCTCGACCTG 81062 |||| | ||| ||||| |||| ||| Sbjct 1037651 CATGAAGGGGCCTCCGGTTTCGATCTG 1037625 >seq1 Length=4810746 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||| | || ||||||||||||||||||||||| || ||||||||||| || ||||| ||| Sbjct 3590322 AAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTCATTTTCGCT 3590263 Query 27544 GGTAAGCAACT 27554 |||||||| || Sbjct 3590262 GGTAAGCAGCT 3590252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310121973680