Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq6 168 5e-37 seq10 87.8 1e-12 >seq6 Length=1650383 Score = 168 bits (186), Expect = 5e-37 Identities = 403/604 (67%), Gaps = 19/604 (3%) Strand=Plus/Minus Query 29872 CTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTC 29931 |||||| | ||||||| ||| ||| |||||||||||||||| |||||| | ||| Sbjct 1315132 CTTCAGGGCATCCACGTGGTCCTTGTACACGTGAGCGTCTCCCATAGTGTGGATGAGCTC 1315073 Query 29932 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29991 || || || |||| || || || ||||| || | |||| ||| ||| || Sbjct 1315072 GCCACAGTCCAGATCGGTCACCTGGGCAATCATTCGAGTCAACAGAGCGTAAGAGGCAAT 1315013 Query 29992 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT- 30050 ||| ||||| || || || |||| || | |||| |||||| ||||| ||||| ||| Sbjct 1315012 GTTGAAGGGGACACCCAGACCCAGATCACAGGACCGCTGGTACAGCTGGCACGACAGCCG 1314953 Query 30051 ------CTCCGTCG-CT-------CACGTAAAACTGACACATGGCGTGGCACGGAGGAAG 30096 ||||| || ||| || ||||| || | ||| || ||||| || Sbjct 1314952 GCCCCGCTCCGAGTTCTTGTACGACACATAGAACTGGCAGAACATGTGACAGGGAGGCAG 1314893 Query 30097 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 30156 |||||| | || || |||||||| || ||| ||||| || | ||| | || Sbjct 1314892 AGCCATCTTGGACAGATCGGCAGGGTTCCATGCAGACAGAATGATTCGTCGGTCCTGGGG 1314833 Query 30157 GTTGTTCCTGATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 30215 |||| || ||| ||| || | | | | ||||||||||| ||| || ||||| Sbjct 1314832 GTTGGTCTTGA-GAGTGTGAATCACCTGCTTGAGCTGATCCACGCCCTGGCCACTGTAGT 1314774 Query 30216 CTGCC-CTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGT 30274 ||| | || ||| ||||||| ||||| ||||| | ||| ||||| || ||||| ||| Sbjct 1314773 CTGTGTCGCA-GTCTTTGTACTCGGCTCCAAAATGACGCCATTGGAAGCCATACACGGGT 1314715 Query 30275 CCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCG 30334 |||||||||||||| ||||| | | || ||| |||| ||| || |||| ||| Sbjct 1314714 CCCAGGTCTCCCTCACGTCTGTGTCCCAGTCCAGCCTTCTCCAGAAACTCCTTGGATCCG 1314655 Query 30335 TTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 30394 || |||||||||| | | ||| || |||| ||| || || | || Sbjct 1314654 TTTCCGTCCCAGATGTGAATGTTCTTTTCGCTCAGCTTCTTGCCGTCGGTACATCCGGCC 1314595 Query 30395 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGG 30454 || |||||||||||||| |||| ||| | | ||||||| ||| || ||||| || Sbjct 1314594 ACAAACCACAGCAGCTCTTCCAAAACGCCTCGGTAGAAGACCCGCTTTGTGGTGAGCAGA 1314535 Query 30455 GGAA 30458 |||| Sbjct 1314534 GGAA 1314531 >seq10 Length=888286 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/186 (73%), Gaps = 10/186 (5%) Strand=Plus/Minus Query 52729 TCGTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 52788 ||||||||||| | || | || | | | ||| |||| || ||||||||||| ||| Sbjct 502258 TCGTCAAGGTGCGAATGCGAACCACAAAGATCCCCCAGATTGGAGACAAGTTTGCCTCGC 502199 Query 52789 -TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTT-- 52843 |||||| || ||||| || || | | | | | ||| | ||||||||||| || Sbjct 502198 GTCACGGA-CAGAAGGGTACCATTGGTGTGACTTACAGACAC--GAGGACATGCCGTTTT 502142 Query 52844 CGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGAT 52903 || | || || || |||||||| |||||||||||||||||||| ||||||| | || Sbjct 502141 CGGCC--GAGGGTGTCGTGCCCGATATCATCATCAACCCCCACGCCATTCCCTCGCGTAT 502084 Query 52904 GACCGT 52909 |||||| Sbjct 502083 GACCGT 502078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310206875588