Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq6 127 2e-24 seq10 84.2 2e-11 >seq6 Length=1650383 Score = 127 bits (140), Expect = 2e-24 Identities = 387/604 (64%), Gaps = 23/604 (4%) Strand=Plus/Minus Query 29646 TCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTC 29705 |||| | ||||||||||| ||| |||||||| ||||||| ||||||| | ||| | Sbjct 1315130 TCAGGGCATCCACGTGGTCCTTGTACACGTGAGCGTCTCCCATAGTGTGGATGAGCTCGC 1315071 Query 29706 CCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 29765 | || || |||| || || || ||||| || | |||| ||| ||| |||| Sbjct 1315070 CACAGTCCAGATCGGTCACCTGGGCAATCATTCGAGTCAACAGAGCGTAAGAGGCAATGT 1315011 Query 29766 TAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAG----- 29820 | ||||| || || || |||| || | |||| |||||| ||||||||||| || Sbjct 1315010 TGAAGGGGACACCCAGACCCAGATCACAGGACCGCTGGTACAGCTGGCACGACAGCCGGC 1314951 Query 29821 --CTCTCC--------GTCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAA 29867 | |||| || ||| || ||||| | ||||| || || ||||| | Sbjct 1314950 CCCGCTCCGAGTTCTTGTACGACACATAGAACTGGCAGAACATG---TGACAGGGAGGCA 1314894 Query 29868 GGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTG 29927 | ||||| || || |||||||| ||| ||| ||||| || | ||| | | Sbjct 1314893 GAGCCATCTTGGACAGATCGGCAGGGTTCCATGCAGACAGAATGATTCGTCGGTCCTGGG 1314834 Query 29928 GGTTGTTCCTGATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAG 29986 ||||| || ||| ||| || | | | | ||||||||||| ||| || |||| Sbjct 1314833 GGTTGGTCTTGA-GAGTGTGAATCACCTGCTTGAGCTGATCCACGCCCTGGCCACTGTAG 1314775 Query 29987 TCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGT 30046 |||| | ||||| | ||| ||||| || ||||| ||| Sbjct 1314774 TCTGTGTCGCAGTCTTTGTACTCGGCTCCAAAATGACGCCATTGGAAGCCATACACGGGT 1314715 Query 30047 CCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCG 30106 |||||||||||||| ||||| | | || ||| |||| ||| || |||| ||| Sbjct 1314714 CCCAGGTCTCCCTCACGTCTGTGTCCCAGTCCAGCCTTCTCCAGAAACTCCTTGGATCCG 1314655 Query 30107 TTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 30166 || |||||||||| | | ||| ||| |||| ||| || || | || Sbjct 1314654 TTTCCGTCCCAGATGTGAATGTTCTTTTCGCTCAGCTTCTTGCCGTCGGTACATCCGGCC 1314595 Query 30167 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGG 30226 || |||||||||||||| |||| ||| | | ||||||| ||| || ||||| || Sbjct 1314594 ACAAACCACAGCAGCTCTTCCAAAACGCCTCGGTAGAAGACCCGCTTTGTGGTGAGCAGA 1314535 Query 30227 GGAA 30230 |||| Sbjct 1314534 GGAA 1314531 >seq10 Length=888286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/186 (72%), Gaps = 10/186 (5%) Strand=Plus/Minus Query 53493 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCATC-C 53551 ||||||||||| | || | ||| | | | ||| |||| || ||||||||||| || | Sbjct 502258 TCGTCAAGGTGCGAATGCGAACCACAAAGATCCCCCAGATTGGAGACAAGTTTGCCTCGC 502199 Query 53552 TTCACGGCGCAAAAGGGGACATGCGGAGCGGTCCTGACT--CAGGAGGACATGCCCTT-- 53607 |||||| || ||||| || || | | || || || ||||||||||| || Sbjct 502198 GTCACGGA-CAGAAGGGTACCATTGGTGTGA--CTTACAGACACGAGGACATGCCGTTTT 502142 Query 53608 CGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGAT 53667 || | || || || |||||||| |||||||||||||||||||| ||||||| | || Sbjct 502141 CGGCC--GAGGGTGTCGTGCCCGATATCATCATCAACCCCCACGCCATTCCCTCGCGTAT 502084 Query 53668 GACGGT 53673 ||| || Sbjct 502083 GACCGT 502078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406163006945554