Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016-
03-01] 39 sequences; 21,750,525 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq3 172 5e-38
>seq3
Length=2682169
Score = 172 bits (190), Expect = 5e-38
Identities = 563/870 (65%), Gaps = 11/870 (1%)
Strand=Plus/Plus
Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316
|| ||||| ||||| || ||||| |||||||| || || ||||| | | ||| || ||
Sbjct 1914849 TTCTGGTAGTCGGACACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTTC 1914908
Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTT---AGAGCTACA 4373
||||| || || || || || || | |||||| || | ||| || || ||
Sbjct 1914909 TCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGG---AGTTTCCGAGGGCCACC 1914965
Query 4374 AGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATT 4433
|||| ||||| || ||||| || || ||||||| |||||| | | ||| || || |
Sbjct 1914966 AGCAGCCGGTCGGCCACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCCAGC 1915025
Query 4434 AATCTCACAGGT-AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGAT 4492
| | | |||| ||||||| |||| ||||| || || || ||||| || ||
Sbjct 1915026 AGAC-CGCAGGGGAGCGCGTCGGTCAGGAACTCCTGCTCGATGCCAACGGCCTCGACAAT 1915084
Query 4493 TATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGC 4552
| || | | | | || || || || | | || |||| | ||| ||
Sbjct 1915085 CACGTCCTCGACAATCTTCTTGGAGGGCCGGTTCTCGAGGTGCGAGAACAGCAGACAGGC 1915144
Query 4553 AAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGG 4612
||| || |||| ||| ||||||| | || || ||||| || || || | |||||
Sbjct 1915145 AAAGTCCGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGG 1915204
Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672
||| | ||||| ||| || ||||| || || | |||||| || || || || || |||||
Sbjct 1915205 CATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCGGAGAAAAAGATGCC 1915264
Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCA 4732
|| ||||||||||| || | | ||| || || | | | | ||| |||||
Sbjct 1915265 CTCCACGGCGGCAAAGGCAATGAGTCGCTCGCCAAAGGTGGACTCGTCGTCGGAGATCCA 1915324
Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792
|| | ||||||| || || ||||| | ||| ||||| || | || ||||| || |
Sbjct 1915325 CTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCGATGGCGTTGAACAG 1915384
Query 4793 TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852
| || || ||||| | || || ||||| || || || || |||| ||
Sbjct 1915385 GTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTTTCCGA 1915444
Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAAC 4912
|| || || || || ||||| || ||||| ||||| | || || | | || ||
Sbjct 1915445 GTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCAC 1915504
Query 4913 TTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAA 4972
||| |||| | || || | ||| ||||| || || ||||| ||| ||||| ||
Sbjct 1915505 CTCGCCGGAAAACCGCTCCACCAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCAAAGAA 1915564
Query 4973 CGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA---GTTTTTTCCAGTGGGG 5029
|||| || || || || ||| || | ||||| || | | || | ||||| |
Sbjct 1915565 GGCCAGCACGTGGGAGATGAAGAACCGCTCGTCGTTGTTGAGCCGGTTCTCCCAGTCGCC 1915624
Query 5030 CAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089
|| || || | ||| | ||| || | ||||| |||||||| || || || |||||
Sbjct 1915625 CATGTCCTTGCCGAGATCGATTTCCTCGGCCGTCCAGAACGACGCCTCGGCCTTCTTGTA 1915684
Query 5090 CATAGACCAAATATCAGGATACTGAATCGG 5119
||| ||| || || | ||||| || ||
Sbjct 1915685 CATCTGCCAGATCTCGTGGTACTGGATGGG 1915714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427049397017987
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |