Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3 172 5e-38 >seq3 Length=2682169 Score = 172 bits (190), Expect = 5e-38 Identities = 563/870 (65%), Gaps = 11/870 (1%) Strand=Plus/Plus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || ||||| ||||| || ||||| |||||||| || || ||||| | | ||| || || Sbjct 1914849 TTCTGGTAGTCGGACACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTTC 1914908 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTT---AGAGCTACA 4373 ||||| || || || || || || | |||||| || | ||| || || || Sbjct 1914909 TCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGG---AGTTTCCGAGGGCCACC 1914965 Query 4374 AGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATT 4433 |||| ||||| || ||||| || || ||||||| |||||| | | ||| || || | Sbjct 1914966 AGCAGCCGGTCGGCCACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCCAGC 1915025 Query 4434 AATCTCACAGGT-AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGAT 4492 | | | |||| ||||||| |||| ||||| || || || ||||| || || Sbjct 1915026 AGAC-CGCAGGGGAGCGCGTCGGTCAGGAACTCCTGCTCGATGCCAACGGCCTCGACAAT 1915084 Query 4493 TATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGC 4552 | || | | | | || || || || | | || |||| | ||| || Sbjct 1915085 CACGTCCTCGACAATCTTCTTGGAGGGCCGGTTCTCGAGGTGCGAGAACAGCAGACAGGC 1915144 Query 4553 AAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGG 4612 ||| || |||| ||| ||||||| | || || ||||| || || || | ||||| Sbjct 1915145 AAAGTCCGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGG 1915204 Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672 ||| | ||||| ||| || ||||| || || | |||||| || || || || || ||||| Sbjct 1915205 CATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCGGAGAAAAAGATGCC 1915264 Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCA 4732 || ||||||||||| || | | ||| || || | | | | ||| ||||| Sbjct 1915265 CTCCACGGCGGCAAAGGCAATGAGTCGCTCGCCAAAGGTGGACTCGTCGTCGGAGATCCA 1915324 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792 || | ||||||| || || ||||| | ||| ||||| || | || ||||| || | Sbjct 1915325 CTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCGATGGCGTTGAACAG 1915384 Query 4793 TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852 | || || ||||| | || || ||||| || || || || |||| || Sbjct 1915385 GTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTTTCCGA 1915444 Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAAC 4912 || || || || || ||||| || ||||| ||||| | || || | | || || Sbjct 1915445 GTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCAC 1915504 Query 4913 TTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAA 4972 ||| |||| | || || | ||| ||||| || || ||||| ||| ||||| || Sbjct 1915505 CTCGCCGGAAAACCGCTCCACCAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCAAAGAA 1915564 Query 4973 CGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA---GTTTTTTCCAGTGGGG 5029 |||| || || || || ||| || | ||||| || | | || | ||||| | Sbjct 1915565 GGCCAGCACGTGGGAGATGAAGAACCGCTCGTCGTTGTTGAGCCGGTTCTCCCAGTCGCC 1915624 Query 5030 CAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089 || || || | ||| | ||| || | ||||| |||||||| || || || ||||| Sbjct 1915625 CATGTCCTTGCCGAGATCGATTTCCTCGGCCGTCCAGAACGACGCCTCGGCCTTCTTGTA 1915684 Query 5090 CATAGACCAAATATCAGGATACTGAATCGG 5119 ||| ||| || || | ||||| || || Sbjct 1915685 CATCTGCCAGATCTCGTGGTACTGGATGGG 1915714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049397017987