Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq6 183 2e-41 seq10 93.3 3e-14 >seq6 Length=1650383 Score = 183 bits (202), Expect = 2e-41 Identities = 406/604 (67%), Gaps = 19/604 (3%) Strand=Plus/Minus Query 27138 CTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTC 27197 |||||| | |||||||| ||| ||| |||||||||||||||| ||||||| | ||| Sbjct 1315132 CTTCAGGGCATCCACGTGGTCCTTGTACACGTGAGCGTCTCCCATAGTGTGGATGAGCTC 1315073 Query 27198 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 27257 || || || |||| || || || ||||| || | |||| ||| ||| || Sbjct 1315072 GCCACAGTCCAGATCGGTCACCTGGGCAATCATTCGAGTCAACAGAGCGTAAGAGGCAAT 1315013 Query 27258 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT- 27316 ||| ||||| || || || |||| || | |||| |||||| ||||| ||||| ||| Sbjct 1315012 GTTGAAGGGGACACCCAGACCCAGATCACAGGACCGCTGGTACAGCTGGCACGACAGCCG 1314953 Query 27317 ------CTCCA---TCGCTTACG-----TAAAACTGACATATGGCGTGGCACGGAGGAAG 27362 |||| || |||| || ||||| || | ||| || ||||| || Sbjct 1314952 GCCCCGCTCCGAGTTCTTGTACGACACATAGAACTGGCAGAACATGTGACAGGGAGGCAG 1314893 Query 27363 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 27422 |||||| | || || |||||||| || ||| ||||| || | ||| | || Sbjct 1314892 AGCCATCTTGGACAGATCGGCAGGGTTCCATGCAGACAGAATGATTCGTCGGTCCTGGGG 1314833 Query 27423 GTTGTTCCTGATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 27481 |||| || ||| ||| || | | | | ||||||||||| ||| || ||||| Sbjct 1314832 GTTGGTCTTGA-GAGTGTGAATCACCTGCTTGAGCTGATCCACGCCCTGGCCACTGTAGT 1314774 Query 27482 CTACC-CTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGT 27540 || | || ||| ||||||| ||||| ||||| | ||||||||| || ||||| ||| Sbjct 1314773 CTGTGTCGCA-GTCTTTGTACTCGGCTCCAAAATGACGCCATTGGAAGCCATACACGGGT 1314715 Query 27541 CCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCG 27600 |||||||||||||| ||||| | | || ||| |||| ||| || |||| ||| Sbjct 1314714 CCCAGGTCTCCCTCACGTCTGTGTCCCAGTCCAGCCTTCTCCAGAAACTCCTTGGATCCG 1314655 Query 27601 TTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 27660 || |||||||||| | | ||| ||| |||| ||| || || | || Sbjct 1314654 TTTCCGTCCCAGATGTGAATGTTCTTTTCGCTCAGCTTCTTGCCGTCGGTACATCCGGCC 1314595 Query 27661 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGG 27720 || |||||||||||||| |||| ||| | | ||||||| ||| || ||||| || Sbjct 1314594 ACAAACCACAGCAGCTCTTCCAAAACGCCTCGGTAGAAGACCCGCTTTGTGGTGAGCAGA 1314535 Query 27721 GGAA 27724 |||| Sbjct 1314534 GGAA 1314531 >seq10 Length=888286 Score = 93.3 bits (102), Expect = 3e-14 Identities = 136/186 (73%), Gaps = 10/186 (5%) Strand=Plus/Minus Query 48509 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-C 48567 ||||||||||| | || | ||| | | | ||| |||| || ||||||||||| || | Sbjct 502258 TCGTCAAGGTGCGAATGCGAACCACAAAGATCCCCCAGATTGGAGACAAGTTTGCCTCGC 502199 Query 48568 TTCACGGCGCAAAAGGGGACATGTGGAGC--CGTCCTGACCCAGGAGGACATGCCCTT-- 48623 |||||| || ||||| || ||| | | | | ||| | ||||||||||| || Sbjct 502198 GTCACGGA-CAGAAGGGTACCATTGGTGTGACTTACAGACAC--GAGGACATGCCGTTTT 502142 Query 48624 CGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGAT 48683 || | || || || |||||||| |||||||||||||||||||| ||||||| | || Sbjct 502141 CGGCC--GAGGGTGTCGTGCCCGATATCATCATCAACCCCCACGCCATTCCCTCGCGTAT 502084 Query 48684 GACCGT 48689 |||||| Sbjct 502083 GACCGT 502078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507024368609