Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 179 5e-40 seq3 111 2e-19 >seq2 Length=2949780 Score = 179 bits (198), Expect = 5e-40 Identities = 454/686 (66%), Gaps = 6/686 (1%) Strand=Plus/Plus Query 77943 ACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTA 78002 || ||||| | || || || || || |||||||| | | ||| || | | | || Sbjct 80009 ACGTCATCAAGGCCGGGACACTCGTTGGGGCACATGAGGGTCCACTCGGCGTTCTGCTCG 80068 Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||| | ||| || || || || ||||| ||||| | || |||||||||| || | Sbjct 80069 ACTCGCTCCATGAACAGGTCGGGGATCCAGAGAGCCAGGAACAGATCTCGGGCTCGAATC 80128 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || || || |||||| || ||| ||||| | | || ||||| || Sbjct 80129 TCCTCCTTACCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGACGTCGTCGTGCCAGGGC 80188 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCG 78182 || || || || || | |||| ||||| || || || ||||| || | |||| ||| Sbjct 80189 TCCAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCGCCCTGGTCGACGTATCGAGCG 80248 Query 78183 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAA 78242 ||||| || || |||| || ||| || | |||||||| || ||||| || ||||||| Sbjct 80249 GTGTTGTTGTACACTCGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTGGTTCCAGCG 80308 Query 78243 ATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTA 78302 || || || | || || || || ||||| | || || ||||| || ||| Sbjct 80309 ATGTAGGAGCCGGTAGCTCGGATGTTGTGGATGGACAGACCAATGCCTCCAGCGGACTTG 80368 Query 78303 GATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||| || | || |||||||| || || || ||| ||| ||||| Sbjct 80369 GAAATGAGAGCACAAGTCTTGAGAGTGTCGTAGATGCCGTCGATGGAGTCGTCCTTCATG 80428 Query 78363 TTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGA 78422 || | || ||||| ||||| || | || || ||||| || | | || ||| Sbjct 80429 TTGACGAGGAAACACGACGACATCTGGGGCTGGGGGGTGCCTGCGTTGTACAGGGTGGGA 80488 Query 78423 GATGCATGCGTAAACCATTTTTCAGAAA-GTAGATTGTATGTTTCAATAGCTGATTCTAT 78481 || ||||| || || | || | ||| | |||| ||||| || || |||||| | || Sbjct 80489 GAAGCATGGGTGAAGTACTTCTGAGACATGTAG-TTGTAGGTCTCGATAGCTCGGGCAAT 80547 Query 78482 GTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCA--ACC 78539 ||| || || || || | || ||||| | ||| ||||||||||| ||| | | Sbjct 80548 GTCGTCGCCGTGGATACCGACAGACACTCGCATGATCATCTGCTGAGGTCTCTCAGCAAC 80607 Query 78540 GTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 78599 | | | || | | || || ||||| | |||| ||| || || ||||| |||||| Sbjct 80608 GGC--ACCGTTGACTCGCAGCAGGTATGCTCGCTCCAGAGTCTTGAAGCCAAAGTAGTTG 80665 Query 78600 TATGAAAAGTCTCTCTCGTAAATAAT 78625 || | |||||||| ||||| | ||| Sbjct 80666 TAGGTGAAGTCTCTGTCGTAGAGAAT 80691 >seq3 Length=2682169 Score = 111 bits (122), Expect = 2e-19 Identities = 383/596 (64%), Gaps = 6/596 (1%) Strand=Plus/Plus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| | ||| ||||| || || ||||| || |||| || | ||||| || Sbjct 1915131 AACAGCAGACAGGCAAAGTCCGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAG 1915190 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || || |||||||| || || || || |||||||| || || | || || || || Sbjct 1915191 AAGGTCAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCG 1915250 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG 48311 || || || ||||| || ||||| ||||| || | |||| ||| || | ||| ||| Sbjct 1915251 GAGAAAAAGATGCCCTCCACGGCGGCAAAGGCAATGAGTCGCTCGCCAAAGGTGGACTCG 1915310 Query 48312 TTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT 48368 | || |||||| | ||||| || ||||||||||| | || || || || || Sbjct 1915311 TCGTCGGAGATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCG 1915370 Query 48369 ATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGA 48428 || || || || || || || || ||| || || | ||| || || || | || Sbjct 1915371 ATGGCGTTGAACAGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGC 1915430 Query 48429 CTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCT 48488 || |||| ||||| || || || || ||||| || ||||| || || | || Sbjct 1915431 GAGTAGGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCC 1915490 Query 48489 TCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCA 48548 || | | ||| ||||| |||| || || ||| ||||| || || || || || Sbjct 1915491 TCGGGGGCCTGCACCTCGCCGGAAAACCGCTCCACCAGGTTCTCGTTGACGATGCCGTCC 1915550 Query 48549 CTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATA---TTTTTCGTTGGAAGTCAGT 48605 || ||||| || || | || || || || | | |||||| | | Sbjct 1915551 GAGGCGGCAAAGAAGGCCAGCACGTGGGAGATGAAGAACCGCTCGTCGTTGTTGAGCCGG 1915610 Query 48606 TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCC 48665 || | |||||| || || || | ||| | ||| || || ||||| || || ||| Sbjct 1915611 TTCTCCCAGTCGCCCATGTCCTTGCCGAGATCGATTTCCTCGGCCGTCCAGAACGACGCC 1915670 Query 48666 TCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || || || || ||||| | ||| || || ||| ||||| ||||| | ||||| Sbjct 1915671 TCGGCCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAA 1915726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668461348960