Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016-
03-01] 39 sequences; 21,750,525 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq7 163 6e-35
seq2 143 6e-29
seq1 116 8e-21
seq3 95.1 3e-14
seq9 89.7 1e-12
>seq7
Length=1109975
Score = 163 bits (180), Expect = 6e-35
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || || ||||| | ||| || || ||||||||||||||||
Sbjct 1062783 ACCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1062724
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||| ||||| || || || ||||| ||||| | || || ||||| ||
Sbjct 1062723 AAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1062664
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || ||
Sbjct 1062663 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1062604
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101
|| || ||||| |||||||| || | ||||| || || ||||||||||
Sbjct 1062603 CTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1062554
>seq2
Length=2949780
Score = 143 bits (158), Expect = 6e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || || || || || ||||| || | ||| || || ||||||||||||||||
Sbjct 2456744 ACCTCCTCGGAGACGCAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 2456685
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||| ||||| || || || ||||| ||||| | || || ||||| ||
Sbjct 2456684 AAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCCGGGGG 2456625
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || ||| | || || ||||| |||| || ||
Sbjct 2456624 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 2456565
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098
||||| ||||| ||||| || || | ||||| || || || ||||
Sbjct 2456564 CTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 2456518
>seq1
Length=4810746
Score = 116 bits (128), Expect = 8e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 317020 TCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTG 317079
|||| || ||||| || || | ||| ||||| |||| || | |||||| || |||||
Sbjct 2137215 TCCTGGGTGGGGAAACCCTCGACCTGGCCGTTGGCAATGGCTCGCATCAGGGTGGACTTA 2137156
Query 317080 CCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTG 317139
|||||||| |||||||| || ||||| || || || ||| || || ||||
Sbjct 2137155 CCAGCACCGTTGGGGCCACAGAGACCGTATCGTCGGCCTCGCTTAAGTCGAAGCTGGGTT 2137096
Query 317140 TTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCG 317199
|||||| |||||||| |||| || ||||||||||||||||| | |||||| |||||
Sbjct 2137095 CGGTTCAGCAGAATCTTGGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCT 2137036
Query 317200 CC 317201
||
Sbjct 2137035 CC 2137034
Score = 87.8 bits (96), Expect = 4e-12
Identities = 111/152 (73%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 315708 GAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTG 315767
|||| ||||| |||| | ||||||| ||||||||||||||||| | |||||| | ||
Sbjct 2138555 GAGAGTCTCGA--TCCAGATAGTTGGTAGGCTCATCAAGAACGATCAGATGGGGTCGCTG 2138498
Query 315768 CCATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCG 315827
||| | |||| | | || ||||| | || || ||||||||||| || ||||| ||
Sbjct 2138497 CCAGGTACAGGCGGCAAGCACCAGCTTGACCTTCTGTCCACCAGACAGACCTCGGATTCG 2138438
Query 315828 AGAATGAGTGGTAAATTCTGGGTCAAGGCCAA 315859
|| |||| | || || || || || ||||
Sbjct 2138437 GGAGTGAGAGACAAGCTCGGGCTCGAGACCAA 2138406
>seq3
Length=2682169
Score = 95.1 bits (104), Expect = 3e-14
Identities = 153/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250
|||||||| | |||||| | || ||| |||| | |||||||| || | ||||||
Sbjct 1915059 AGGAGTTCCTGACCGACGCGCTCCCCTGCGGTCTGCTGGGCATGAACGCCAAGCTCATGT 1915000
Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310
| || || || || || || || || || | | ||||| || || || || || |
Sbjct 1914999 GCCAGTACATTGAGTTTGTGGCCGACCGGCTGCTGGTGGCCCTCGGAAACTCCAAGGTCT 1914940
Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370
| ||||||| |||||||||| || |||||| ||| || || || || || ||||
Sbjct 1914939 ACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGCAAGACCAACT 1914880
Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410
||||||| ||||| || ||| || || | | |||||||
Sbjct 1914879 TCTTCGAGAAGCGGGTGTCCGACTACCAGAAGGCCGGTGT 1914840
>seq9
Length=923155
Score = 89.7 bits (98), Expect = 1e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 274668 GAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTTTCGCGC 274727
|| || || || |||||||||| |||||| || || || ||| |||| || || || ||
Sbjct 620292 GACGCTTCTCGCACGTTCAGCATCTTACCTCGCAGCGGAAAAGCGCCGTATCTCTCTCGG 620351
Query 274728 CCGATGACCGAAAGACCGGCGATCGCGAGAGTTGCTGCTGAATCTCCCTCTGTGAGAATC 274787
|| || |||| | ||||||| | || | || ||||| ||||||||||||||||||
Sbjct 620352 CCAATCACCGCCAAACCGGCGTTTGCCATCGTCATGGCTGAGTCTCCCTCTGTGAGAATC 620411
Query 274788 AAAGTACAC 274796
| ||| |||
Sbjct 620412 AGAGTGCAC 620420
Score = 87.8 bits (96), Expect = 4e-12
Identities = 229/344 (67%), Gaps = 18/344 (5%)
Strand=Plus/Plus
Query 273861 ATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGA---TAGTCCCCTGAAGGGAT 273917
||||||||||| || || ||||||| ||||| || || ||| ||| || ||
Sbjct 619467 ATGTTGTTGCTTCCTGCGAAATCCTGCGCCATGGCCATGATTGTAGAACCC---AGAGAG 619523
Query 273918 ACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTTC 273977
| || || ||||| || | ||||||||| ||| ||||| || ||| || || ||
Sbjct 619524 GCTTCTCCATGGTGGTATCCCGTGTGTTCGGAGATGTAACCGACGAGCTGGGCGAC--TC 619581
Query 273978 ACAT--CGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCT 274035
|| | || || ||||||||||| | | ||| |||||| ||||| ||||
Sbjct 619582 GGATGGAGACGGTGAATTTTCGCTTGAACGAACCAAACAGCACCTTTCGCTGTCCAGGCT 619641
Query 274036 TGAACCCATCAACGACCGATGGAAT--ACTGC--GTTCCAAATCATACCGAGAGAACAAA 274091
|||| || || ||||| | ||| || || ||| || | ||||||| |
Sbjct 619642 TGAATCCGTCGCACACCGAGGCAATGGACCGCATGTT----GTCTGCCATCGAGAACAGA 619697
Query 274092 ATCAGTTCCTTGTCAATGAAGTCAGGGACGGGAACCTCGGGCTTCTTGTGGTCGAGCTGA 274151
||||| ||||||| ||||| |||| ||||||| | | | |||| | ||||| |||
Sbjct 619698 ATCAGCTCCTTGTTGATGAAATCAGACACGGGAATGTGAGTCAGCTTGGGATCGAGATGA 619757
Query 274152 TTACCGGGTTCGTATGCCAACATCCACTCCTTGCGGTCCTCTGC 274195
|||| || | ||| || ||||||||| ||||| || ||
Sbjct 619758 GTACCAGGCTTGTACTTTCTCAACCACTCCTTTCGGTCGTCAGC 619801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738676957506
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |