Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030696_20[genbank_20GCA_5F001600535.1_202016- 03-01] 39 sequences; 21,750,525 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq7 163 6e-35 seq2 143 6e-29 seq1 116 8e-21 seq3 95.1 3e-14 seq9 89.7 1e-12 >seq7 Length=1109975 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || ||||| | ||| || || |||||||||||||||| Sbjct 1062783 ACCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1062724 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || || || ||||| ||||| | || || ||||| || Sbjct 1062723 AAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1062664 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 1062663 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1062604 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 || || ||||| |||||||| || | ||||| || || |||||||||| Sbjct 1062603 CTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1062554 >seq2 Length=2949780 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || || ||||| || | ||| || || |||||||||||||||| Sbjct 2456744 ACCTCCTCGGAGACGCAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 2456685 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || || || ||||| ||||| | || || ||||| || Sbjct 2456684 AAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCCGGGGG 2456625 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | || || ||||| |||| || || Sbjct 2456624 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 2456565 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 ||||| ||||| ||||| || || | ||||| || || || |||| Sbjct 2456564 CTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 2456518 >seq1 Length=4810746 Score = 116 bits (128), Expect = 8e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 317020 TCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTG 317079 |||| || ||||| || || | ||| ||||| |||| || | |||||| || ||||| Sbjct 2137215 TCCTGGGTGGGGAAACCCTCGACCTGGCCGTTGGCAATGGCTCGCATCAGGGTGGACTTA 2137156 Query 317080 CCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTG 317139 |||||||| |||||||| || ||||| || || || ||| || || |||| Sbjct 2137155 CCAGCACCGTTGGGGCCACAGAGACCGTATCGTCGGCCTCGCTTAAGTCGAAGCTGGGTT 2137096 Query 317140 TTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCG 317199 |||||| |||||||| |||| || ||||||||||||||||| | |||||| ||||| Sbjct 2137095 CGGTTCAGCAGAATCTTGGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCT 2137036 Query 317200 CC 317201 || Sbjct 2137035 CC 2137034 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 315708 GAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTG 315767 |||| ||||| |||| | ||||||| ||||||||||||||||| | |||||| | || Sbjct 2138555 GAGAGTCTCGA--TCCAGATAGTTGGTAGGCTCATCAAGAACGATCAGATGGGGTCGCTG 2138498 Query 315768 CCATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCG 315827 ||| | |||| | | || ||||| | || || ||||||||||| || ||||| || Sbjct 2138497 CCAGGTACAGGCGGCAAGCACCAGCTTGACCTTCTGTCCACCAGACAGACCTCGGATTCG 2138438 Query 315828 AGAATGAGTGGTAAATTCTGGGTCAAGGCCAA 315859 || |||| | || || || || || |||| Sbjct 2138437 GGAGTGAGAGACAAGCTCGGGCTCGAGACCAA 2138406 >seq3 Length=2682169 Score = 95.1 bits (104), Expect = 3e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250 |||||||| | |||||| | || ||| |||| | |||||||| || | |||||| Sbjct 1915059 AGGAGTTCCTGACCGACGCGCTCCCCTGCGGTCTGCTGGGCATGAACGCCAAGCTCATGT 1915000 Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310 | || || || || || || || || || | | ||||| || || || || || | Sbjct 1914999 GCCAGTACATTGAGTTTGTGGCCGACCGGCTGCTGGTGGCCCTCGGAAACTCCAAGGTCT 1914940 Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370 | ||||||| |||||||||| || |||||| ||| || || || || || |||| Sbjct 1914939 ACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGCAAGACCAACT 1914880 Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 ||||||| ||||| || ||| || || | | ||||||| Sbjct 1914879 TCTTCGAGAAGCGGGTGTCCGACTACCAGAAGGCCGGTGT 1914840 >seq9 Length=923155 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 274668 GAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTTTCGCGC 274727 || || || || |||||||||| |||||| || || || ||| |||| || || || || Sbjct 620292 GACGCTTCTCGCACGTTCAGCATCTTACCTCGCAGCGGAAAAGCGCCGTATCTCTCTCGG 620351 Query 274728 CCGATGACCGAAAGACCGGCGATCGCGAGAGTTGCTGCTGAATCTCCCTCTGTGAGAATC 274787 || || |||| | ||||||| | || | || ||||| |||||||||||||||||| Sbjct 620352 CCAATCACCGCCAAACCGGCGTTTGCCATCGTCATGGCTGAGTCTCCCTCTGTGAGAATC 620411 Query 274788 AAAGTACAC 274796 | ||| ||| Sbjct 620412 AGAGTGCAC 620420 Score = 87.8 bits (96), Expect = 4e-12 Identities = 229/344 (67%), Gaps = 18/344 (5%) Strand=Plus/Plus Query 273861 ATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGA---TAGTCCCCTGAAGGGAT 273917 ||||||||||| || || ||||||| ||||| || || ||| ||| || || Sbjct 619467 ATGTTGTTGCTTCCTGCGAAATCCTGCGCCATGGCCATGATTGTAGAACCC---AGAGAG 619523 Query 273918 ACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTTC 273977 | || || ||||| || | ||||||||| ||| ||||| || ||| || || || Sbjct 619524 GCTTCTCCATGGTGGTATCCCGTGTGTTCGGAGATGTAACCGACGAGCTGGGCGAC--TC 619581 Query 273978 ACAT--CGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCT 274035 || | || || ||||||||||| | | ||| |||||| ||||| |||| Sbjct 619582 GGATGGAGACGGTGAATTTTCGCTTGAACGAACCAAACAGCACCTTTCGCTGTCCAGGCT 619641 Query 274036 TGAACCCATCAACGACCGATGGAAT--ACTGC--GTTCCAAATCATACCGAGAGAACAAA 274091 |||| || || ||||| | ||| || || ||| || | ||||||| | Sbjct 619642 TGAATCCGTCGCACACCGAGGCAATGGACCGCATGTT----GTCTGCCATCGAGAACAGA 619697 Query 274092 ATCAGTTCCTTGTCAATGAAGTCAGGGACGGGAACCTCGGGCTTCTTGTGGTCGAGCTGA 274151 ||||| ||||||| ||||| |||| ||||||| | | | |||| | ||||| ||| Sbjct 619698 ATCAGCTCCTTGTTGATGAAATCAGACACGGGAATGTGAGTCAGCTTGGGATCGAGATGA 619757 Query 274152 TTACCGGGTTCGTATGCCAACATCCACTCCTTGCGGTCCTCTGC 274195 |||| || | ||| || ||||||||| ||||| || || Sbjct 619758 GTACCAGGCTTGTACTTTCTCAACCACTCCTTTCGGTCGTCAGC 619801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738676957506