Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zygosaccharomyces_20rouxii_20[genbank_20GCA_5F001950435.1_202016-12- 08] 220 sequences; 19,469,227 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq12 89.7 4e-13 seq25 82.4 6e-11 >seq12 Length=625618 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-- 48569 ||||| || ||||| || || ||||||||||||||| ||||| | || ||| || Sbjct 615765 CTTAAAACCAAATGCAGAGTAGACTCCTTTTGAATGTTATAATCGGATAA-AGTC-CTAC 615822 Query 48570 CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCT 48629 |||| ||||| ||||||||| | | ||||| | || || || || | || ||| | Sbjct 615823 CGTCTTCCAGTTGCTTACCGGCAAAGATTAATCTTTGTTGGTCTGGAGGAATACCTTCTT 615882 Query 48630 TGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTA 48689 | ||| ||| || ||||| | |||||||||| ||| || ||| | || | Sbjct 615883 TATCCTGAATCTTTGACTTGACGTTGTCAATGGTATCGGAAGATTCAACCTCCAAGGTAA 615942 Query 48690 TGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| || ||||| || || ||||||||||| Sbjct 615943 TAGTCTTACCAGTTAGAGTCTTAACGAAAATCTGCAT 615979 Score = 82.4 bits (90), Expect = 6e-11 Identities = 153/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-- 48569 ||||| || ||||| || || ||||||||| ||||| ||||| | || ||| || Sbjct 614872 CTTAAAACCAAATGCAGAGTAGACTCCTTTTGGATGTTATAATCGGATAAA-GTC-CTAC 614929 Query 48570 CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCT 48629 | ||||| || || ||||| | | |||| | ||||| || || | || ||| | Sbjct 614930 CATCCTCTAGTTGTTTACCTGCAAAGATTAGTCTTTGCTGGTCAGGTGGAATACCTTCTT 614989 Query 48630 TGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGT 48687 | ||| ||| || ||||| | | || |||||||||| ||| ||| || | || Sbjct 614990 TATCCTGAATCTTTGACTTGACGTTGTCG--ATGGTATCGGAAGATTCCACTTCCAGAGT 615047 Query 48688 TATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||||||||| ||||| || || ||||||||||| Sbjct 615048 GATCGTTTTACCGGTCAGAGTCTTGACGAAAATCTGCAT 615086 >seq25 Length=339617 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571 ||||| || || || || || ||| || || ||||||||||||| || || || Sbjct 149866 CTTAAAACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAATCAGACAGAGTTCTACCG 149925 Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 || |||| |||||||| | |||| || | ||| || || || | || ||||||| Sbjct 149926 TCTTCCAATTGCTTACCTGCAAAAATCAATCTCTGTTGGTCAGGAGGAATACCTTCCTTG 149985 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 ||| |||||| || | | | || ||||| | ||| ||| || | || ||| Sbjct 149986 TCCTGAATTTTAGATTTAACATTATCGATAGTATCAGAAGATTCCACTTCCAAAGTGATG 150045 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || | ||||||||||| || ||||| Sbjct 150046 GTTTTACCAGTCAAGGTTTTCACAAAGATTTGCAT 150080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250070520220